Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1320 atgcgGTTTGGGCGTAACATAGCGCAATGGAGAAACGCGGCGAAGGAAGCGTTGGATCGCACGGCTATCACCGTGAAATTCCTGTGTTGGCTTCACTTCACCAGCAACTACCTCTGTTCCCCATGTCACGCGTACGGGGTAAGCATGCTCCCCACCCTCAACGTCGCCGGCGACGTCCTTCTCGCGGACCACCTCTCTCCGCGGCTCGGGAACATCGGGCACGGAGACTTGGTTCTGGTTCGGTCCCCTCTGAACCCTAAGATCAGGTTGACGAAGCGCATCGTCGCCATGGAAGGGGACACCGTCACTTACTTCGACCCTATGCGCTCTGAAGCTGCTCAAGTTGCAGTGGTACCAAAGgggcatgtttggattcaaggGGATAACATTTATGCTTCCCATGATTCACGGCATTTTGGTCCTGTTCCATATGGTCTTATACAAGGAAAAGTGTTTTTCCGGGTATGGCCACCTGATAGCTTTGGACTACTAGGTcaatga 501 0.509 MRFGRNIAQWRNAAKEALDRTAITVKFLCWLHFTSNYLCSPCHAYGVSMLPTLNVAGDVLLADHLSPRLGNIGHGDLVLVRSPLNPKIRLTKRIVAMEGDTVTYFDPMRSEAAQVAVVPKGHVWIQGDNIYASHDSRHFGPVPYGLIQGKVFFRVWPPDSFGLLGQ 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1320 166 SUPERFAMILY LexA/Signal peptidase 37 164 IPR036286 -
Ssu8g1320 166 Gene3D Umud Fragment, subunit A 35 162 - -
Ssu8g1320 166 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 8 164 - -
Ssu8g1320 166 Pfam Signal peptidase, peptidase S26 113 156 IPR019533 GO:0004252|GO:0006465
Ssu8g1320 166 Pfam Signal peptidase, peptidase S26 25 105 IPR019533 GO:0004252|GO:0006465
Ssu8g1320 166 CDD S26_SPase_I 46 151 IPR019533 GO:0004252|GO:0006465
Ssu8g1320 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 90 102 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ssu8g1320 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 37 53 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ssu8g1320 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 118 137 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1320 Ssu-Chr8 24530557 24533141 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1320 49 165 MADS-box Gene Family AT1G29960 50.847 6.97e-38 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1320 K09647 - csin:114274489 236.113