Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1308 ATGTTCAAATATATTCCCCAAGGAGATGCCATCTTCATGAAGTGGGTGCTAACAACATGGACGGACGAGGAATGCAAGCACATAATGCAGAACTGTCACAAGGCACTCCCTGAGGGAGGCAAACTAATTGCTTGTGAGCCAGTGCTGCCAGAGCACTCAGACGAGAGTCACAGAACGAGGGCGTTGCTTGAGGGTGACATATTTGTGATGACAATCTACAGAGCCAAGGGGAAGCACAGGACTGAAGAACAGTTCAGGCAGCTAGCCATTGATGCAGGTTTCCCTCGTTTCAGAGCCTTCCATGTCGACCATTTCTACACTGTCCTTGAGTTTCAGAAATGA 342 0.4854 MFKYIPQGDAIFMKWVLTTWTDEECKHIMQNCHKALPEGGKLIACEPVLPEHSDESHRTRALLEGDIFVMTIYRAKGKHRTEEQFRQLAIDAGFPRFRAFHVDHFYTVLEFQK 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1308 113 Pfam O-methyltransferase domain 1 94 IPR001077 GO:0008171
Ssu8g1308 113 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 111 IPR029063 -
Ssu8g1308 113 Gene3D Vaccinia Virus protein VP39 1 113 IPR029063 -
Ssu8g1308 113 PANTHER OS02G0823400 PROTEIN 1 112 - -
Ssu8g1308 113 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 113 IPR016461 GO:0008168
Ssu8g1308 113 PANTHER O-METHYLTRANSFERASE 1 112 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1308 Ssu-Chr8 24138542 24196736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1308 1 113 Monolignol Biosynthesis Gene Families AT3G53140 76.991 8.61e-68 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1308 - - gmx:100784957 237.654