Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1303 ATGTTGCCGCCTTCAAAGAGGGagtttaaagatatttatgtagTCTTTGAGCTCATGGAGTCTGATCTCCATCAAGTCATCAAAGCTAATGACGATTTGACCCGTGAACACCATCAGTTTTTTCTTTATCAGATGCTACGTGCATTGAAGTATATGCATACAGCTAGTGTATATCACAGAGACCTTAAACCCAAGAATATACTGGCAAATGCGAACTGCAAACTCAAAGTTTGTGATTTTGGATTGGCAAGAGTTGCATTCAATGATACCCCAACAACAACTTTTTGGACGGATTATGTTGCTACAAGATGGTACAGAGCCCCAGAATTGTGTGGCTCCTTCTTTTTTAAGTATACACCAGCAATTGATATATGGAGCATTGGATGCATTTTTGCAGAGGTGTTGACAGGAAAGCCACTGTTTCCTGGTAAAAGTGTTGTGCATCAATTAGATTTGATTACTGATCTCCTTGGGACACCATCACCTGAAACTATTGCAGGAGTTCGAAATGAGAAGGCAAGGAAATATTTGATGGAAATGCGGAAGAAATCTCCTGTGCCATTTGAACAGAAATTTCCAAATGCTGATCCATTGGCACTTCGCCTACTACGAAGGCTTTTAGCATTTGATCCAAAGGATCGGCCAACTGCTCAAGAGGCACTAGCTGATCCCTTCTTTAAGGGTTTGGCCAAAGTTGAGAGAGAACCTTCTTGTCAGCCAATTTCAAAATTGGAATTTGAGTTTGAGAGGAGACGAGTGACAAAGGAGGATGTTAGGGAACTAATATATCGGGAAATACTGGAATATCATCCCCAGTTGCTTAAAGAATACATGAATGGAACTGAAGGCACTCACTTCCTTTACCCTAGTGCAATAGATCAATTCAGAAAGCAATTTGCTTATCTTGAGGAAAATCATGGTAAAAGTGGCCCCGTGATTCCTCCAGAAAGGAAGCATGTCTCCCTTCCAAGgtCCACTGTTCACTCTAGTACAGTTCCTCCTAGTACACAGCCATCTTTTACTTCATACGAGAACAAGCAAATGGTGGAAGAGGCATCAAAGATTTCGAGATCAGTAGAATCAAATTCCGGAAGTCAACTAAGGAGTTCGCGACCTCCACCAAGAGTGCCAGCAGGAAACTCGGGTGACTCTAGGAATGGCTTTGCTTTGAAGCCAATTTTTGAGCACACTGCAGCTGAGGTATCCATGGTGCCACTTTTGAGCACTATCATCCAGAACTCCCTATAG 1248 0.4175 MLPPSKREFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKYMHTASVYHRDLKPKNILANANCKLKVCDFGLARVAFNDTPTTTFWTDYVATRWYRAPELCGSFFFKYTPAIDIWSIGCIFAEVLTGKPLFPGKSVVHQLDLITDLLGTPSPETIAGVRNEKARKYLMEMRKKSPVPFEQKFPNADPLALRLLRRLLAFDPKDRPTAQEALADPFFKGLAKVEREPSCQPISKLEFEFERRRVTKEDVRELIYREILEYHPQLLKEYMNGTEGTHFLYPSAIDQFRKQFAYLEENHGKSGPVIPPERKHVSLPRSTVHSSTVPPSTQPSFTSYENKQMVEEASKISRSVESNSGSQLRSSRPPPRVPAGNSGDSRNGFALKPIFEHTAAEVSMVPLLSTIIQNSL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1303 415 MobiDBLite consensus disorder prediction 306 384 - -
Ssu8g1303 415 SUPERFAMILY Protein kinase-like (PK-like) 9 230 IPR011009 -
Ssu8g1303 415 MobiDBLite consensus disorder prediction 324 370 - -
Ssu8g1303 415 SMART serkin_6 5 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1303 415 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 19 1 376 - -
Ssu8g1303 415 Gene3D Transferase(Phosphotransferase) domain 1 21 249 - -
Ssu8g1303 415 Pfam Protein kinase domain 8 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1303 415 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 376 - -
Ssu8g1303 415 ProSiteProfiles Protein kinase domain profile. 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1303 415 Gene3D Phosphorylase Kinase; domain 1 1 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1303 Ssu-Chr8 23997685 24001848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1303 1 382 MAP Kinase Gene Family AT1G53510 78.238 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Ssu8g1303 Pkinase 3.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1303 - K04371 gmx:100800878 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1303 8 23997685 24001848 Ssu8g1303 8 23997685 24001848 ECH