Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1301 ATGGTGCTTAACAATTTGCAGTGGAAACTACCATACAGTCTGCTTCATCTTTCTTGTATACAGGACAAATATAAAGATAGCAGCACCTCACCCCAAGATCAGTTTCTAATGATACAACAAAGATTGCTTCAAAAGGACTCGAACATAGTGTTTGAGGTCTCGTTGGCTGATTTTCAAGGGGATGAGGATGATGCATTCAGGAAGATTAGGATGAGAGCTGAAGATGTTCAAGGGAGGAATGTTATGACAAATTTCTGGGGAATGGATTTCAACTCTGACAAGTTGAGGTCATTGATGCGAAAATGGAAAATTCTAATTGAAACCCATGTGGATGTGAAGACAACTGATAATTACACATTGAGGATGTTCTGCTTTGGATTTACCAAGAACTAA 393 0.3868 MVLNNLQWKLPYSLLHLSCIQDKYKDSSTSPQDQFLMIQQRLLQKDSNIVFEVSLADFQGDEDDAFRKIRMRAEDVQGRNVMTNFWGMDFNSDKLRSLMRKWKILIETHVDVKTTDNYTLRMFCFGFTKN 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1301 130 PANTHER 40S RIBOSOMAL PROTEIN S3A 46 129 - -
Ssu8g1301 130 PANTHER 40S RIBOSOMAL PROTEIN S3A 46 129 - -
Ssu8g1301 130 SMART Ribosomal_S3Ae_2 19 130 IPR001593 GO:0003735|GO:0005840|GO:0006412
Ssu8g1301 130 Pfam Ribosomal S3Ae family 50 129 IPR001593 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1301 Ssu-Chr8 23911499 23912602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1301 50 129 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 78.750 9.73e-44 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1301 K02984 - gmx:100813273 146.362