Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1289 ATGATTGGATTCCGGAGTGACCATAAGGCTGGGAATAAGTGCAATGGTAATTCTAATGGTGTTCCGGATCGTATTGGACGACTTGTTAATGGAAGAGAGCTAAGAAAAAGCAGCAGGGCACCTCTTTTGAACGAGTCTCctgatagtaataatagtagtaatgTGGTTACTGAATATTTTGAGCATGACCTGCGCTTAAGAGAAGATAATAACTCTGTTGCTTCCTATGTTGAACAACGGGCAGCAGCAGCGTGGGGTCCTAGTGAGGGATGCCAAACGGAAGATGGGAGACCTTTCAGACAACGGCTTTTGGTGGTGGCCAATAGGCTGCCAGTCTCAGCAATCAGGAAAGGCGAGGATTCATGGTCTTTGGAGATAAGTGCTGGTGGCCTGGTGACCGCTCTTTTAGGTGTGAAGGAGTTCGAAGCGAGGTGGATAGGTTGGGCTGGTGTCAATGTGCCTGATGAGATTGGACAAAAGGCACTTACAAAAGCTTTGGCCGAAAAGAGGTGTATCCCTGTATTTCTTGATGAAGAGATTGTTCATCAATATTATAATGGCTATTGCAACAACATTTTGTGGCCCCTTTTCCATTACCTTGGACTTCCGCAAGAAGACCGCCTTGCTACCACACGTAGTTTCCAATCTCAGTTTGAAGCATATCAGAAAGCAAATCAAATGTTTGCCGATGTTGTAAACAAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCACAATGCTTAAAGAATTATAACCCCAAAATGAAAGTTGGCTGGTTTCTGCATACCCCATTTCCATCTTCTGAAATTCACAGGACATTGCCATCTCGTTCAGAGCTTCTGCATGCTGTTCTTGCAGCTGATTTGGTTGGTTTTCACACCTACGATTATGCACGACATTTTGTTAGTGCATGTACTCGCATTCTTGGACTTGAGGGCACGCCTGAAGGGGTTGAGAATCAAGGGAAGATGACTCGAATTGCTGCATTTCCAATAGGTATAGACTCAGAACGATTCATACGTGCACTTGACCTTCCTCAAGTCAAGGATCACATCAAAGAATTACAAGAGAGATTTAAAGGAAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATCCCCCAAAAAATTCTAGCATTTGAAAAATTTTTGGAAGAGAATCGTGATTGGCATGATAAAGTTGTTCTGCTTCAAATTGCTGTGCCAACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTCCATGAAATTGTTGGTCGCATCAATGGCAGATTTGGAAGTCTGACTACTGTTCCCATACATCACCTGGATCGCTCTCTTGATTTTCATGCACTGTGTGCTTTGTACGCTGTTACAGATGTAGCACTTGTCACGTCTTTGAGGGATGGAATGAATCTTGTTAGTTACGAATTTGTGGCCTGccaagataaaaagaaaggggTTCTCATTCTTAGCGAATTTGCTGGTGCTGCACAATCACTTGGTGCTGGGGCAATTCTGGTCAACCCTTGGAACATCACAGAAGTTGCTGCTGCAATTGCAAAGGCTCTGAAGATGCCATCAATGGAACGAGAGAAGAGACATAAGCATAACTTTGATCATGTAAAAACCCACACTGCTCAGGAATGGGCAGAAACTTTTGTAagTGAACTAAATGATACTGTAGTTGAGGCACAGCTAAGGACAAAACAAGTTCCACCACGACTCCCAACCAACACTGCTGTGGAACATTATTTACAGTCAAATAATCGGTTGCTTATTTTGGGTTTTAATGGAACTCTAACTGAACCAGTTGAGAGAAAAGGTGATCAGTATAAAGAAATGGAACTAACAGTGCATCCAGAACTGAAACAACCCTTGGCAGAACTTTGTGGTGACCCAAAGACCACAGTTGTTGTGCTTAGTGGAAGTGGCAGAACAGTTCTAGATGAAAACTTTAAAGGATATGACATCTGGCTGGCAGCAGAGAATGGGATGTTCTTAAAACCTTCAAAGGGAGAATGGATGACAACAATGCCTGAGCAACTGAATATGGAATGGGTTGACAGCGTGAAGCATGTTTTTGAATACTTCACAGAAAGAACACCTCGATCATATTTTGAAGAAAGGGAAGCTTCACTTGTATGGAATTATAGACATGCAGATGTTGAGTTTGGAAGACTCCAAGCAAGGGACATGCTGCAGCATCTCTGGACAGGTCCAATTTCTAATGCATCAGTTGAAGTTGTTCAAGGGAGCCGATCTGTTGAGGTTCGAGCTGCTAATGTTACAAAGGGAGCAGCTATTGACCGCATTCTAGGTGAGATAGTCCACAGTAAACCCATGAAGACACCAATTGATTACGTTCTGTGTATAGGACATTTTCTGACAAAGGATGAAGATATATATGCCTTTTTTGAGCCAGAGCCATCTTCTATTGGTGTGGGTCCTCCACGAGGTAAGGTAACAGAAGGAGTTAAGTTTCATGTTGAGAGGATATCGCAATTGAAGATCCCAGCTGGTAAAAATGGAGCAAAGTCATCCCAAAATAAGGGACAACGGCCTGTGTCAAATTCTGAGAAGAAAACAACAAATCACGTCTGCCGTGCCCCACGACGGCCAGCTGCTGAAAAGATCTCTTGGAATGTCCTTGACCTCAAGAAGGAAAATTACTTCTCATGTGCCGTTGGACGAACACAAACAAATGCTCGGTATACGCTGGGATCATCAGATGAAGTTGTTGCATTTCTTAAGGAACTGGCGGATGCATCTCCACGCTCTTTTGTCTGA 2814 0.425 MIGFRSDHKAGNKCNGNSNGVPDRIGRLVNGRELRKSSRAPLLNESPDSNNSSNVVTEYFEHDLRLREDNNSVASYVEQRAAAAWGPSEGCQTEDGRPFRQRLLVVANRLPVSAIRKGEDSWSLEISAGGLVTALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYQKANQMFADVVNKHYEEGDVVWCHDYHLMFLPQCLKNYNPKMKVGWFLHTPFPSSEIHRTLPSRSELLHAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVENQGKMTRIAAFPIGIDSERFIRALDLPQVKDHIKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENRDWHDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGSLTTVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIAKALKMPSMEREKRHKHNFDHVKTHTAQEWAETFVSELNDTVVEAQLRTKQVPPRLPTNTAVEHYLQSNNRLLILGFNGTLTEPVERKGDQYKEMELTVHPELKQPLAELCGDPKTTVVVLSGSGRTVLDENFKGYDIWLAAENGMFLKPSKGEWMTTMPEQLNMEWVDSVKHVFEYFTERTPRSYFEEREASLVWNYRHADVEFGRLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAANVTKGAAIDRILGEIVHSKPMKTPIDYVLCIGHFLTKDEDIYAFFEPEPSSIGVGPPRGKVTEGVKFHVERISQLKIPAGKNGAKSSQNKGQRPVSNSEKKTTNHVCRAPRRPAAEKISWNVLDLKKENYFSCAVGRTQTNARYTLGSSDEVVAFLKELADASPRSFV 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1289 937 Gene3D - 602 825 IPR023214 -
Ssu8g1289 937 Gene3D Glycogen Phosphorylase B; 349 552 - -
Ssu8g1289 937 Gene3D - 689 769 - -
Ssu8g1289 937 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 101 570 - -
Ssu8g1289 937 Gene3D Glycogen Phosphorylase B; 94 348 - -
Ssu8g1289 937 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 32 929 - -
Ssu8g1289 937 TIGRFAM T6PP: trehalose-phosphatase 598 816 IPR003337 GO:0003824|GO:0005992
Ssu8g1289 937 MobiDBLite consensus disorder prediction 847 875 - -
Ssu8g1289 937 CDD HAD_TPP 600 841 - -
Ssu8g1289 937 Pfam Trehalose-phosphatase 605 822 IPR003337 GO:0003824|GO:0005992
Ssu8g1289 937 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 102 567 IPR012766 GO:0003825|GO:0005992
Ssu8g1289 937 MobiDBLite consensus disorder prediction 849 872 - -
Ssu8g1289 937 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 32 929 IPR001830 GO:0003824|GO:0005992
Ssu8g1289 937 MobiDBLite consensus disorder prediction 1 26 - -
Ssu8g1289 937 Pfam Glycosyltransferase family 20 102 567 IPR001830 GO:0003824|GO:0005992
Ssu8g1289 937 SUPERFAMILY HAD-like 599 929 IPR036412 -
Ssu8g1289 937 CDD GT20_TPS 102 567 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1289 Ssu-Chr8 23493520 23506726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1289 11 932 Trehalose Biosynthesis Gene Families AT1G78580 74.921 0.0 1427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1289 K16055 - gmx:100789554 1671.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1289 8 23493520 23506726 Ssu3g1647 3 47578000 47595283 ECH
Ssu8g1289 8 23493520 23506726 Ssu8g1289 8 23493520 23506726 ECH