Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1287 ATGAAGATTCAGTGCAACGTGTGTGAGGCTGCAGAGGCCAAGGTTCTGTGCTGTGCTGACGAAGCTGCGCTGTGTTGGGTGTGTGATGAGAAGGTTCATGCGGCTAACAAGCTCGCCAGCAAGCACCAGAGAGTGTCTCTTTCTACCTCTTCCTCTCATATGCCAAAATGTGACATTTGTCAGGAAGCATTAGGCTATTTTTTCTGTCTAGAGGATCGGGCTCTGCTCTGCAGAAAATGTGATTTGGCAGTACACACTGCAAATGCTTATGTCTCTGGTCATCAGAGGTTTCTTCTCACTGGTGTAAGAGTAGGCCTTGAAGCTATAGAACCTGGTGCTTCCTCAACTTCTCTGAAGTCAGATTCTGGGGAGAAAATTTCAGATACAAAGTCTTCTTCTGTCTCTAAAAAGGTTTCCACAGTGCCCCAGCCATCAGATTACAATGAAGTCTTACCCATTGAAGTTGGAGGAGTTGGGGAGTTTCCACCGCCAGCTAAGGTGTCTTTTGGTGGTGGTTCTACAGCTGGAAATATCTCACAGTGGACGATTGATGAATTTATTGGCCTAAATGAGTTCAGTCAGAATTACGATTATATGGAAGGATCATCAAGGGCTGACAGTGGTAAGCTCTGGGATTCTGATTCTCCTGTTTTAAGATCCGGTGAAGAGGAAATGGAGAAGGAGGATGACTATTTGGAACTGCGTTCCGGATTCATCTTGGACGGTTCCTCAGATCCCTTCCCCACCTACAGCTTCTGGGTTATACTGGCCAAAAGACCCTCAATATTCATCCGATAG 798 0.4612 MKIQCNVCEAAEAKVLCCADEAALCWVCDEKVHAANKLASKHQRVSLSTSSSHMPKCDICQEALGYFFCLEDRALLCRKCDLAVHTANAYVSGHQRFLLTGVRVGLEAIEPGASSTSLKSDSGEKISDTKSSSVSKKVSTVPQPSDYNEVLPIEVGGVGEFPPPAKVSFGGGSTAGNISQWTIDEFIGLNEFSQNYDYMEGSSRADSGKLWDSDSPVLRSGEEEMEKEDDYLELRSGFILDGSSDPFPTYSFWVILAKRPSIFIR 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1287 265 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 229 - -
Ssu8g1287 265 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Ssu8g1287 265 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Ssu8g1287 265 MobiDBLite consensus disorder prediction 113 142 - -
Ssu8g1287 265 Gene3D Classic Zinc Finger 1 92 - -
Ssu8g1287 265 SMART bboxneu5 4 47 IPR000315 GO:0008270
Ssu8g1287 265 SMART bboxneu5 52 99 IPR000315 GO:0008270
Ssu8g1287 265 CDD Bbox1_BBX-like 5 47 - -
Ssu8g1287 265 CDD Bbox1_BBX-like 56 99 - -
Ssu8g1287 265 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Ssu8g1287 265 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1287 Ssu-Chr8 23380043 23383450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1287 1 229 C2C2-CO-like Transcription Factor Family AT1G78600 52.869 2.11e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu8g1287 zf-B_box 9.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1287 - - gmx:100790959 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1287 8 23380043 23383450 Ssu8g1287 8 23380043 23383450 ECH