Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1282 ATGTTATATGGAAAGACTAACAAAAGTTGTGTTGCCGGTGTGAAATTGAGCTGCATTGCACTTTCAATTGCTTCAAATTTCTATTGTGCTAGATGGCATGCTGTTGCTTCGTGGACTTGGGATGCACAGGATGAAACGTGTGGGATTTGTAGGATGGCCTTTGATGGATGTTGTCCTGACTGTAAACTTCCTGGGGACGACTGCCCACTGATTTGGGGTGCATGCAATCACGCATTTCATTTGCACTGTATCCTGAAATGGGTGAATTCTCAGACATCACAAGCGCATTGCCCCATGTGCCGTCGTGAATGGCAGTTTAAAGGATGA 327 0.4526 MLYGKTNKSCVAGVKLSCIALSIASNFYCARWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1282 108 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 30 107 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Ssu8g1282 108 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 108 IPR013083 -
Ssu8g1282 108 PANTHER RING BOX 30 107 - -
Ssu8g1282 108 ProSiteProfiles Zinc finger RING-type profile. 58 101 IPR001841 -
Ssu8g1282 108 SUPERFAMILY RING/U-box 27 107 - -
Ssu8g1282 108 CDD RING-H2_APC11 44 106 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Ssu8g1282 108 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 30 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1282 Ssu-Chr8 23276095 23278021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1282 58 101 C3H Transcription Factor Family AT1G72220 41.304 2.45e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1282 K03358 - gmx:100776546 191.815