Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1275 ATGGCTCCTGAATATGCAATGCACGGTTATTTGACCGACAAAGCAGATGTTTATAGTTTTGGCATTGTTGCATTGGAAATTGTTTGTGGAAAGAGTGCATCTCTTGAAAGAAAAGGTAATCTAATGGACCTAGTTGATGAGAGGTTGGGTGAAGACTTCAAAAGAGATGAAGTAATGGTCATGATCAATGTGGCTCTTTTATGCACACAAGTTTCTCCACTACACAGACCCACCATGGCTTCAGTGGTCTGCATGCTTGAAGGCAAAACTGATGTTCAAGATGTGGTGTTAGACACAAGCCAGGTATTAGATGGAAAGAAGTTAGAGGTAATCCAACAGTATTACCGTctcagagaaaaaaataagaccCATGATATTCAAGAAGAGAGCATCTCAATGGCTGAAACTTCAGCCTTTATGTCTGACACAGATCTATATTCTGTCAACATGGATTCTTCTTACTAG 465 0.3828 MAPEYAMHGYLTDKADVYSFGIVALEIVCGKSASLERKGNLMDLVDERLGEDFKRDEVMVMINVALLCTQVSPLHRPTMASVVCMLEGKTDVQDVVLDTSQVLDGKKLEVIQQYYRLREKNKTHDIQEESISMAETSAFMSDTDLYSVNMDSSY 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1275 154 Gene3D Transferase(Phosphotransferase) domain 1 1 108 - -
Ssu8g1275 154 Pfam Protein tyrosine and serine/threonine kinase 1 85 IPR001245 GO:0004672|GO:0006468
Ssu8g1275 154 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 125 - -
Ssu8g1275 154 SUPERFAMILY Protein kinase-like (PK-like) 1 93 IPR011009 -
Ssu8g1275 154 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1275 Ssu-Chr8 22987131 22987873 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1275 1 123 Receptor kinase-like Gene Family AT1G07650 45.000 1.53e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu8g1275 PK_Tyr_Ser-Thr 7.3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1275 - - gmx:100786496 243.047