Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1274 ATGGATGCTAAGGGTGGGAAGATTGAAGCAAGTATAAGGAAGcctatgattaaaaaatttgctAAAGTTATTGTTGAGGGTGAGGTATATGCGATGGCATATTTCTCTGTGGTGAATAATTACGGCTCCTATAGGGTGACAAGGCATGAATTCAAATTGTTGTTCAATTCAAAGACAAATGTTCTATCATGTGAAAGTGCTATTATACCTTCATTTGGTTTTACTTTAATGGATTCTGAGCATATTACCAAGACAAAGGGAGAGTCAGATTATTTGCTtgATGTAATGGGAGTTCTCATTGGTGTTTATGCTGAAAAGAGTTTTGTCAAAGGTGGGAAAACTTCTAGGGTGATAGTGCTGGAGTTAGCTAATCACAAgGGGATCATCAAGTGTGCTTTGTTTGGGGATTATGTGGACATGGTGAATGATTTTCTTGCTATTGGTAGTGCTCAGCGTCCTGTTGTTGTACTCCAACTTGGAAGGGTGAAGAGTTACAAGgGTCAAGTGAATGTTCATAATGTGATGAATGCCTCTAGGTTGCTATGGGATCCACAAATTCCTAAGGCAATTGAGTTTAGGAATGGTGATAAAGATGGTATGTCTATGTTGCACAATGAATTTCTCAAAACATTCCCTAGGAAATCTGTTAATGATCTACAGATTTCTGTTGTGATCAAGGGTGATACGTGGTGGTACATGGCTTGTAAGTGCCACAAAGCTGTTGCTCCAGACGGTGGTCTTTATTATTGCCCTGGCTGTGATAGTCATGTGATTGATGTCACACCTTGttttaaattGAAGCCGGAAGTTAGTGATGGGAAAGATGCAGCgtgttttatattgtttgattttgattgtTATGCTCTTCTAAAGAAATCTTGCAAGGAATTGTTGTATACTATGAAGGATCCATCTTTTGTTGAACATCCACCTGAGTGTGATAGCTTAATTGGGAGGGAATTGTTGTTCAAGGTGGAGAAGCAAGCTGATCGAGCGTATCGTTATGAAGATTCTTTTAAACTGAAGATGCGCTCCATTCCTTCGTCTTTGCCTGCTGTTGGTGAGGTTGGTGTGCTATTAGAGGAGTTGTCAAAAGGTCAAACAAGTCTTTCACAGATTGAAATTGGAACTATAGGACTGGGTGAATCTTCTTCAACAAGTTTTCAGTCTATTGACCGTAACAAAGGAAGAGTGAATACTCATCTTGAAAGCGTTATGCTACAGCTTTCGAACAATGAGTCTACAGCTCTTAGACTTCTAGAATTAACGGCTATTCCACTTGGAGATGGTGTTGGAAATGTTGATGCAGAAGTAGATGATCTAAATGAGAAAGTGGAAGTTGTTAGTGAGTGTAGTAATGGTCGTAGAAAGAGGATCAAGTTAAAACCTGTTAAGTTGGAGCAGTATAAATGTTGA 1416 0.3799 MDAKGGKIEASIRKPMIKKFAKVIVEGEVYAMAYFSVVNNYGSYRVTRHEFKLLFNSKTNVLSCESAIIPSFGFTLMDSEHITKTKGESDYLLDVMGVLIGVYAEKSFVKGGKTSRVIVLELANHKGIIKCALFGDYVDMVNDFLAIGSAQRPVVVLQLGRVKSYKGQVNVHNVMNASRLLWDPQIPKAIEFRNGDKDGMSMLHNEFLKTFPRKSVNDLQISVVIKGDTWWYMACKCHKAVAPDGGLYYCPGCDSHVIDVTPCFKLKPEVSDGKDAACFILFDFDCYALLKKSCKELLYTMKDPSFVEHPPECDSLIGRELLFKVEKQADRAYRYEDSFKLKMRSIPSSLPAVGEVGVLLEELSKGQTSLSQIEIGTIGLGESSSTSFQSIDRNKGRVNTHLESVMLQLSNNESTALRLLELTAIPLGDGVGNVDAEVDDLNEKVEVVSECSNGRRKRIKLKPVKLEQYKC 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1274 471 SUPERFAMILY Nucleic acid-binding proteins 1 66 IPR012340 -
Ssu8g1274 471 SUPERFAMILY Nucleic acid-binding proteins 85 194 IPR012340 -
Ssu8g1274 471 CDD RPA1_DBD_A_like 1 61 - -
Ssu8g1274 471 SUPERFAMILY Nucleic acid-binding proteins 223 327 IPR012340 -
Ssu8g1274 471 CDD RPA1_DBD_B_like 94 193 - -
Ssu8g1274 471 Gene3D - 1 66 IPR012340 -
Ssu8g1274 471 Gene3D - 215 352 IPR012340 -
Ssu8g1274 471 Pfam Replication factor-A C terminal domain 223 330 IPR013955 -
Ssu8g1274 471 Pfam Domain of unknown function DUF223 2 66 IPR003871 -
Ssu8g1274 471 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 2 340 - -
Ssu8g1274 471 PANTHER REPLICATION FACTOR A 1, RFA1 2 340 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ssu8g1274 471 Gene3D - 69 201 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1274 Ssu-Chr8 22943727 22946279 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1274 1 299 Core DNA Replication Machinery Family AT4G19130 22.874 8.45e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1274 - - lja:Lj1g3v3385890.1 330.872