Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1273 ATGAAGATCACTTCCTCTCAACTTCTCTTCCTTTCACTCCTTGCCTTATGGTTCACATCGCTTGCTTTTGGAGCCAACACCACTCAACCAGAAGAAGTGCAAGCTCTGAAAGACATAGCCAACACTCTTGGTAAGAAGGATTGGGACACCGATATAGATCCATGCAGTAAACAACCTCCCTGGTTTACGCCTACCGTGAACGACGTACAGAACAATGTCACCTGCAATTGCTCTATCCCCGGTGACAACTTCTGCCATGTTGTTGCAATATTGCTGAAATCACAAAATCTTCAAGGCAAGCTCCCACCCGAACTGATAAGGTTGCCTTACCTCGAAGAAATTGACCTCACTCGCAACTACCTTAATGGTACAATACCTAGAGAATGGGGCTCCTCCAATCTTCGCAAAATTTCTCTTCTTGGAAATCGACTAACTGGTCCAATCCCAAAAGAGATAGCAAACATCACCACGCTTGAAAGTTTGGTCCTGGAATTCAATCAATTCTCTGGAAATCTCCCCCCAGAACTTGGGAACCTTTCTCGCATTCAAAGACTGCATCTTACCTCTAACAATTTTACCGGAGAGCTGCCTGAAACTTTGGCGAAACTTACAACATTGACAGAACTCCGACTTAGTGACAATAACTTCTCTGGAAAGATACCCGATTTTATTCAAAGATGGACAAATCTTGATATACTAGCAATTCAAGGGAGTGGTTTAAGTGGGCCAATTCCTTCTGGAATTTCATTTCTGCAAAACTTAGAGGACTTGAGCATTAGTGACTTGAATGGACCTGATTCTACTTTTCCACCAGTTaataatatgacaaaattgaaaagattGATACTAAGAAGTTGCCTTATTAATGACACATTACCTCAATATCTTGGTAACAAGACAAACTTTAACAAGATGCAGACCTTAGACCTGAGCTTTAACAAATTAAGCGGGAACATTACAGAAACCTTTGAAGATCTAGCAGGATTgacttacttaTATTTAACTGGAAACTTATTCACTGGACCAGTACCCAAGTGGGTAGAAAATGCTAAATCCATAGATCTTTCATATAACAACTTCAGCAATGAAAACCACCAGCAACAGACATGCCAACAGAGTACAAAAACAAAAGTGAACTTGTTTGCAAGCTTTCCGATGAGCAAAaaTGGACCTGTTTATTGTCCGACGACAAACAATGGTTGTTCTAAAACCTTTGATTCTCTCCATATAAATTGTGGTGGTGGAAGAGAGACAAGTAGTGAAggtataatatatgatgatgatTTAGATCCAGCAGGGCCATCAACATCTAAAGAGGGGGGAGAAAACTGGGCTTTTAGCAACACCGGTCACTTCTTGGATAGCAATAATGTATCAGAAACCTATATCCAACAAAATACAACTAGGCTTTCTATGCCTGATTTTGCCCTGTATCAGACCGCACGTGTGTCCCCCATTTCTTTGACTTATTATGGATTTTGTCTGGAAAATGGAGACTACACAGTAATGCTCCATTTTGCAGAGATAATGTTCACTGATGATGACACATATAAGAGCCTAGGGAGGCGTATATTTGATGTTTACATTCAGGGGGAGCGAGTACTGAAGGATTTCAATATTGCAAATAATGCAAGTGGAGTTGGAAAGGAAGTTAAAATACCATTTCCTGCTTATGTGAGTAATAACTCTTTAGAAATTCGCTTTTATTGGGCTGGAAAAGGGACAACTGCTATCCCATATAAATCAATATATGGCCCTCTTATATCAGTTATATCTATCACTCGTGACTCTACAGGTGGTAGCATATCTGCAGGGGTTGTAGTTGGAATAGTAGCTGCTGCAATTGTTATTATCATCCTAATTGTACTTTGGTGGAGAGGTTACATTGGGAAAAGAAATTCATTAGCAAAAGAGTTAAAGGATTTAAATTTGCAAACGAGTTTATTTACTTTGCGTCAGATCAAAGTTGCAACAAATAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGCTTTGGTCCTGTCTATAAGGGCTTTTTATCAAACGGCACGATAATAGCTGTCAAGATGCTTTCATCTAAGTCAAAGCAAGGAAATCGTGAGTTTATAAATGAGATAGGCATGATTTCAGCTTTACAACACCCTTGTCTTGTTAAACTTTATGGTTGTTGTGTTGACGGAGATCAATTGTTGCTGGTATACGAATATATGGAAAACAATAGCCTTGCACGTGCTTTATTTGgtaatgaagaatctCGTTTAAAATTGGATTGGCAAACAAGGCACAAGATATGTGTTGGTATTGCAAGAGGTTTGGCTTTCCTACATGAAGAATCCAGATTAAAAATTGTTCATAGGGACATTAAGGCCACTAATGTGTTGCTAGACAAAGACTTAAACCCAAAGATATCTGATTTTGGTCTAGCCAAACTCGATGAAGAGGACAATACTCACATAAGCACAAGAATAGCTGGGACTTAG 2481 0.3845 MKITSSQLLFLSLLALWFTSLAFGANTTQPEEVQALKDIANTLGKKDWDTDIDPCSKQPPWFTPTVNDVQNNVTCNCSIPGDNFCHVVAILLKSQNLQGKLPPELIRLPYLEEIDLTRNYLNGTIPREWGSSNLRKISLLGNRLTGPIPKEIANITTLESLVLEFNQFSGNLPPELGNLSRIQRLHLTSNNFTGELPETLAKLTTLTELRLSDNNFSGKIPDFIQRWTNLDILAIQGSGLSGPIPSGISFLQNLEDLSISDLNGPDSTFPPVNNMTKLKRLILRSCLINDTLPQYLGNKTNFNKMQTLDLSFNKLSGNITETFEDLAGLTYLYLTGNLFTGPVPKWVENAKSIDLSYNNFSNENHQQQTCQQSTKTKVNLFASFPMSKNGPVYCPTTNNGCSKTFDSLHINCGGGRETSSEGIIYDDDLDPAGPSTSKEGGENWAFSNTGHFLDSNNVSETYIQQNTTRLSMPDFALYQTARVSPISLTYYGFCLENGDYTVMLHFAEIMFTDDDTYKSLGRRIFDVYIQGERVLKDFNIANNASGVGKEVKIPFPAYVSNNSLEIRFYWAGKGTTAIPYKSIYGPLISVISITRDSTGGSISAGVVVGIVAAAIVIIILIVLWWRGYIGKRNSLAKELKDLNLQTSLFTLRQIKVATNNFDISNKIGEGGFGPVYKGFLSNGTIIAVKMLSSKSKQGNREFINEIGMISALQHPCLVKLYGCCVDGDQLLLVYEYMENNSLARALFGNEESRLKLDWQTRHKICVGIARGLAFLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGT 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1273 826 SMART serkin_6 661 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1273 826 Pfam Malectin domain 407 590 IPR021720 -
Ssu8g1273 826 Gene3D Ribonuclease Inhibitor 267 390 IPR032675 -
Ssu8g1273 826 Gene3D Ribonuclease Inhibitor 199 266 IPR032675 -
Ssu8g1273 826 SUPERFAMILY Protein kinase-like (PK-like) 644 826 IPR011009 -
Ssu8g1273 826 Pfam Protein tyrosine and serine/threonine kinase 663 818 IPR001245 GO:0004672|GO:0006468
Ssu8g1273 826 SUPERFAMILY L domain-like 82 362 - -
Ssu8g1273 826 Gene3D Phosphorylase Kinase; domain 1 629 736 - -
Ssu8g1273 826 Gene3D Transferase(Phosphotransferase) domain 1 737 826 - -
Ssu8g1273 826 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 75 290 - -
Ssu8g1273 826 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 396 825 - -
Ssu8g1273 826 ProSiteProfiles Protein kinase domain profile. 661 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1273 826 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 75 290 - -
Ssu8g1273 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
Ssu8g1273 826 Gene3D - 407 598 - -
Ssu8g1273 826 Gene3D Ribonuclease Inhibitor 31 198 IPR032675 -
Ssu8g1273 826 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 396 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1273 Ssu-Chr8 22882947 22899689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1273 21 826 Receptor kinase-like Gene Family AT1G53420 55.257 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu8g1273 Malectin 4.9e-42 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1273 - - gmx:100785451 1293.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1273 8 22882947 22899689 Ssu8g1273 8 22882947 22899689 ECH