Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1264 ATGTCAATCAGCATGAAGACCATcatttcctttcaatttttccTCCTTTCACTCCTTCCCATTTGCTCCACATGGCTTGCTTTCGGAGCCACCACGCTTCCACAAAATGAAGTGCTAGCGCTGAAGGATATAGCCAAAACACTTGGTAAGAATAAGGGTTGGAACTTCGATGAAGATCCATGCAGCTGGAAGGGAACGGATACCGATGACAATGAAGTGGCAGACAAGGTGACTTGCAATTGCAAAATGCCCAATGACAGCTTCTGCCATGTTGAGAAAATACTTCTGAAATCACAAAATCTTCAAGGCAGTCTACCCCCACAACTGAACAGATTACCTTATCTCATAGAGATTGAACTCAGCCGTAACTACCTTAGTGGTACAATTCCGAGAGAATGGGGCTCCTCCAACCTCCAAGAAATTTCTCTTCTTGGAAACCGACTAACTGGTCCAATCCCAAAAGAGCTGGCAAACCTCACCAATCTTACACGCTTGATCCTTGAGTTCAATCAATTCTCTGGAAATCTTCCTCCAGAACTTGGGAATCTTGCCCACCTTGAAAAACTGAGGATTAGTGACTTGAATGGAGCTGATTCAACTTTTCCACAACTTGATAATATGAATGGACTGAAAGTATTAGACCTCAGCTATAACAAATTATATGGACAAGTGCCGAGAGACCTTCAGGATTTAAAAGTAGCAACCTACATaTATTTAACAGGAAACTTCCTCAGCGGACCAGTGCCTCAGTGGACAAAGGGCAATAATAAAAACTTAGATCTTTCATATAACAACTTCAGTGTTGAAAACCCAGAACCAGAGGCATGTTACAAGCAAAATGAGAACTTGTTTGCAAGCTTTTCAAGGAATAACTTAGGACCAGTTTCTTGTGAGAGCTACACTAGAAGCTGTGCTAAAAATGTTAAATCTCTACATATAAATTGTGGTGGAAAACAAATTGTTATTGGAGGTATAACATATGATGAAGATATAGATCCAGCTGGACCAGCAGTGTATAAACAGAGTAGAAACAACTGGGCATTTAGCAACACAGGTCACTTCATGGACAATGATACTCTATCTAGACAAGGACAACTTCTACCTTATACcacaaaaaatgaaactagGCTTTATATGACTGATGTTGAATTATATAAGAATGCACGTATTTCCCCTATGTCTTTGACTTATTATGGATTTTGCCTGGAAAATGGAGACTACACAGTAAAGCTCTACTTTGCTGAGATAATGATCACTGATGATAACACATATAAAAGCTTAGGGAGGCGCCTATTTGATGTATACATTCAGGGAAAGCGAGTACTGAAGGATTTCAACATTGCAAATGAAGCACAAGGAGTTGGCAAGGAACTCATAAAACAATTTACTGCTCATGTGAATAGTAATGACTTAGAGATCCGCTTTTATTGGGCTAGCAAAGGGACAACATATATCCCATATAAATCAGTAAATGGTCCTCTCATATCTGCCATTTCTGTTAATTATGACTCTACAGGAGGGATGTCTGCTGGAGCTATTGTTGCAATTGTAGTTGCATTAGTGATTGTTGTCATCTTGATTGTTGTTGGTATACTTTGGTGGAGGGATTTCCTAGGAAAGAAACATTTATCAATGAAAGAGCTAAGGGATTTAGATCTGCAAACCAGTTTATTTACCTTACATCAAATCAAAGCtgcaacaaataattttgatatgtcCAACAAGATTGGAGAAGGAGGCTTCGGTTCTGTTTATAAGGGCATTCTGTCAAATAGCACAACAATAGCAGTCAAACAACTTTCATCCAAATCAGAGCAAGGAACCCGTGAGTTTATAAATGAGATAGGCATGATCTCTGCTTTGCAACATGCTAATCTAGTTAAGCTTTATGGTTGTTGTGTTGAGGGAGATCAATTGTTGCTAGTATATGAATATATGGAAAACAATAGCCTTGCACATGCTTTATTTGACTCAGAAGATAGCCATTTAAAATTGGATTGGCCAACAAGGCAAAAGATTTGTGTTGGTATTGCGAGAGGTTTAGCATTCCTGCATGAACAATCAAGACTAAAAGTTGTTCACAGGGACTTAAAGACCTCTAATGTGTTGCTTGATGAAGACCTGAACCCAAAGATATCTGATTTTGGCTTGGCCAGGCTTCATGAGGGTGACAATACTCACATAAGCACCAGAATTGCAGGGACATGGGGGTATATGGCTCCTGAGTATGCAATGCATGGTTATTTGACTGACAAAGCAGATGTTTATAGTTTTGGAGTTGTTACCATGGAAATTGTAAGTGGAAAGAGAAACACTATTCACCAGTCAAAGGAAGAAGCATTCTATCTTCTTGATTGGGCACATTTGTTGAAAGAGAAAGGTAACATAACGGAGCTAGTTGATCGAAGGTTGGGTTTACATTTCAACGAAGAGGAGGTAATGCTGATGGTCAAAGTGGCTCTCCTATGCACCAATTTCACTTCAAGCCTTAGGCCCTCCATGTCTTCAGTGCTAAGCATGCTTGAGGGCACAACAGAGGTCCCAGAATTTGTTGCACATACAAGTGAGGTAATGGATGAAATGAAGTTGGAGGTAATGAGAGAGTTTTACAGtcaaatggaagaaaataaaataagtgagacACGAAGTATGAGCTTGACAATTGATGTTCCATGGACTGCTTCATCTTCATCAGCTGCAGACCTCAATCTGGCTCACCTGGATGCTTCCTAttgggagaaaaagaaattaagagaatCTGTATGA 2766 0.3839 MSISMKTIISFQFFLLSLLPICSTWLAFGATTLPQNEVLALKDIAKTLGKNKGWNFDEDPCSWKGTDTDDNEVADKVTCNCKMPNDSFCHVEKILLKSQNLQGSLPPQLNRLPYLIEIELSRNYLSGTIPREWGSSNLQEISLLGNRLTGPIPKELANLTNLTRLILEFNQFSGNLPPELGNLAHLEKLRISDLNGADSTFPQLDNMNGLKVLDLSYNKLYGQVPRDLQDLKVATYIYLTGNFLSGPVPQWTKGNNKNLDLSYNNFSVENPEPEACYKQNENLFASFSRNNLGPVSCESYTRSCAKNVKSLHINCGGKQIVIGGITYDEDIDPAGPAVYKQSRNNWAFSNTGHFMDNDTLSRQGQLLPYTTKNETRLYMTDVELYKNARISPMSLTYYGFCLENGDYTVKLYFAEIMITDDNTYKSLGRRLFDVYIQGKRVLKDFNIANEAQGVGKELIKQFTAHVNSNDLEIRFYWASKGTTYIPYKSVNGPLISAISVNYDSTGGMSAGAIVAIVVALVIVVILIVVGILWWRDFLGKKHLSMKELRDLDLQTSLFTLHQIKAATNNFDMSNKIGEGGFGSVYKGILSNSTTIAVKQLSSKSEQGTREFINEIGMISALQHANLVKLYGCCVEGDQLLLVYEYMENNSLAHALFDSEDSHLKLDWPTRQKICVGIARGLAFLHEQSRLKVVHRDLKTSNVLLDEDLNPKISDFGLARLHEGDNTHISTRIAGTWGYMAPEYAMHGYLTDKADVYSFGVVTMEIVSGKRNTIHQSKEEAFYLLDWAHLLKEKGNITELVDRRLGLHFNEEEVMLMVKVALLCTNFTSSLRPSMSSVLSMLEGTTEVPEFVAHTSEVMDEMKLEVMREFYSQMEENKISETRSMSLTIDVPWTASSSSAADLNLAHLDASYWEKKKLRESV 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1264 921 ProSiteProfiles Protein kinase domain profile. 570 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1264 921 PANTHER PUTATIVE-RELATED 83 193 - -
Ssu8g1264 921 PANTHER PUTATIVE-RELATED 186 875 - -
Ssu8g1264 921 Gene3D - 309 503 - -
Ssu8g1264 921 SUPERFAMILY Protein kinase-like (PK-like) 554 858 IPR011009 -
Ssu8g1264 921 ProSitePatterns Serine/Threonine protein kinases active-site signature. 692 704 IPR008271 GO:0004672|GO:0006468
Ssu8g1264 921 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 83 193 - -
Ssu8g1264 921 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 186 875 - -
Ssu8g1264 921 Pfam Malectin domain 310 498 IPR021720 -
Ssu8g1264 921 Gene3D Transferase(Phosphotransferase) domain 1 646 857 - -
Ssu8g1264 921 Gene3D Ribonuclease Inhibitor 37 197 IPR032675 -
Ssu8g1264 921 CDD STKc_IRAK 576 843 - -
Ssu8g1264 921 Pfam Protein tyrosine and serine/threonine kinase 572 839 IPR001245 GO:0004672|GO:0006468
Ssu8g1264 921 Gene3D Phosphorylase Kinase; domain 1 537 645 - -
Ssu8g1264 921 SMART serkin_6 570 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1264 921 ProSitePatterns Protein kinases ATP-binding region signature. 576 598 IPR017441 GO:0005524
Ssu8g1264 921 Gene3D Ribonuclease Inhibitor 198 293 IPR032675 -
Ssu8g1264 921 SUPERFAMILY L domain-like 85 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1264 Ssu-Chr8 22759225 22776104 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1264 30 887 Receptor kinase-like Gene Family AT1G53420 45.946 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu8g1264 PK_Tyr_Ser-Thr 1.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1264 - - gmx:100791136 1311.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1264 8 22759225 22776104 Ssu8g1264 8 22759225 22776104 ECH