Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1263 ATGAGGATAAGTTACCATcgtttcttcttccttttgctCCTTGCTGCCTTTTTCTTTGCCTCCTTTGCTTCTGGAGCCACTCTGCCCGAAGATGAAGTGCAAGCTCTGATAGATATAGCTAAGACACTTGGGAAGAAGAACTGGGATTTCAACGTAGATCCGTGCAGTGGACAACGTAATTGGACGTCGGCAGTTCAAGTGAAAGGGAGCGAAAATAATGTCACATGCAACTGTACCTTTCTCAATAACACCATCTGTCATGTCACCAACATAGTTTTGAAACAACAAAATCTCCCAGGCACTCTCCCGCGGGATCTGTTTAGGTTGCCTTACCTTCAAGAAATTGACCTTACTCGCAACTACCTGAACGGTACAATTCCTAAAGAATGGGGCTCCATGAAACTGGTCAACATCTCCCTCCTTGGAAATCGATTAGTGGGTTCAATACCAATAGAGATAGCAAACATATCCACTCTTCAAAGTTTGGTCTTGGAGGGCAATCAACTGTCTGGAAATATTCCTCCTGAGCTTGGAAATCTAACCCAAATTCAAAGACTGCACCTTACCTCCAACAATTTTACTGGAGAACTACCAGTAACATTGGCCAGGCTCACTACATTACAGGATATTCGACTTGGGGACAATTTGTTCTTTGGGAAGATACCTGATTTTATTCAAAGCTGGACAAGTCTCCAGAAACTAGTGATTCAGGGGAGCGGATTAAGTGGGCCAATTCCTTCTGGAATTTCACTGTTGGAAAATTTAACTGACTTGAGAATCAGTGATCTGAATGGATCTGAACATTCACCTTTTCCACAACTTAATAAGATGAAGTTGAAATATTTGATTCTGAGGAATTGCAACATCAATGGAACACTACCTACATATCTTGGGACAATGACATCTTTAAAAAACTTaGACCTCAGCTTTAACAAATTGACTGGAGCAATTCCAAGTACCTATGATGCCCTAAGAAAAGTGGATTACATATATTTAACTGGAAATCTTCTCAATGGACCAGTGCCTGCATGGACAGAGAAAGCTGACAACGTAGATATTTCATATAACAACTTCAGCATCGCAAGCCAAGGGAGTCTGACATGTCAAGATGGAAATGTGAACTTATTTGCTAGCTCTATGACGCCCAATGACTCAGGAACGGTTGCATGTTTGAGAAGCTATGTTTGTCCAAAAACCTTTTACTCTCTTCATGTAAAATGTGGTGGAAAGATTGTAACAGTCAATAGAAGCACATATGATGATGATTCAGATGCTGGAGGTCCAGCTAGATTTCACCAGAGTGGAATAAGAAACTGGGCATTTAGCACTACTGGTAACTTTATGGATAATGATGGTGGAGACTACTATACCTCATCAAATAAATCTTTGCTTTCTATGGACAATGCTGACCTGTACATGGATGCACGAGTTTCTCCCATTTCTCTGACTTATTATGGATTTTGCCTGGGAAATGGAAACTACACAGTAAATCTACATTTTGCAGAAATCATGTTCATTGATGATCAAACATTTAACAGCCTAGGAAGGCGAGTATTTGATATCTACATTCAGGGAAAGCTGGTGAAGAAGGACTTCAATATTGTAGAAGAAGCAGGAGGAATCGGTAAGGCAGTCATAAAACCCTTCACTGTTGTTGTAACTAGTGGCACCTTGGAGATCCGCTTGTATTGGGCTGGAAAAGGGACAACTAGTCTCCCATTTAGATCAGTGTATGGTCCTCTTATATCAGCTATATCTGTGGAATCTGACTTTCCACCTCCTTCAGAAAACGGAAGTAGCATATCTGCTGGAGCTGTGGTTGGAATTGTGGCTGCAGGAGCTGTTGTTATCATCGTTGTATTTGGTATGCTTTGGTGGAAAGGTTGTTTAGGGAAGAAAAGTTCTTTAGAAAGAgAGCTGAAGAGTTTAGACCTGCGAACAGGTTTATTTACTTTAAGACAGATCAAAGCAGCGACAAACAACTTTGATGTTGCCAATAAGATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGTCTATCAGATGGGACATTAATAGCAGTCAAGCAGCTTTCTTCTAAATCAAGGCAAGGGAATCGTGAGTTTTTAAATGAGATTGGCATGATTTCTGCTTTGCAGCATCCTTATCTTGTTAAACTGTATGGATGTTGTGTGGAGGGAGATCAGCTATTGCTTGTATATGAATATATGGAAAACAATAGCCTTGCTCGTGCTTTATTTGgCCCTGAAGAACAGCAAATAAAATTGGACTGGCCAACGAGATACAAGATCTGTGTTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCATAGGGACATTAAGGCCACTAACGTGTTGCTTGATAAAGATCTCAACCCAAAGATATCTGACTTTGGTTTGGCCAAGCTTGATGAAGAGGACAACACTCATATTAGCACCCGAATAGCTGGGACATATGGATATATGGCTCCAGAATATGCCATGCACGGTTATTTGACTGATAAAGCGGATGTCTATAGCTTTGGAATTGTTGCCTTGGAAATCATAAATGGAAGGAACAACACCATTCACCGACAAAAAGAAGAATCATTCTCTATTCTTGAATGGGCACATCTTCTGAAAGAGAAAGGTGATCTAATGGAGCTAGTTGATAGAAGGTTAGGTTCAGACTTCAATAAAGAGGAGGTACTGGTGATGATCAAGGTGGCTCTGTTATGCACTAATGTGTCTGCAGCACTTAGGCCAACCATGTCATCAGTGGTAAGCATGCTAGAAGGAAGAACTGCTGTCAAAGAAGTGGTTTCAGAGACAAGTGAGGTATTGGATGAGAAGAAGTTGGAGACAATGAGACTATATTACCATGAACTGAATATCTCAAAGAAGAGCCATGGACTACTTCATCTACTTCTGCAACAGATCTGTATCCGGTACACCTGGATTCATCTTACTTGGAGAAGAGAAATTAGAGACAATGGAGAGAAATTGCATTCATTTGTATCAATTATTTGCCATGAGTTGGTACATAAAATTCTTTTCTTCCCCGTAAATCCATTTGTGATTCCATTTTGGTGTGTTTCTTCCCCCCCTGGCTGTAACATACTTTTAATTTGTCGAAAAGAACATATAAACGATAGACAAAGAAGTAACAGTACGTTTATCATGAGAACCATAAAGCTACACAGGTTCAAGAACTTTAGAATTATGATGagaacattataa 3246 0.3993 MRISYHRFFFLLLLAAFFFASFASGATLPEDEVQALIDIAKTLGKKNWDFNVDPCSGQRNWTSAVQVKGSENNVTCNCTFLNNTICHVTNIVLKQQNLPGTLPRDLFRLPYLQEIDLTRNYLNGTIPKEWGSMKLVNISLLGNRLVGSIPIEIANISTLQSLVLEGNQLSGNIPPELGNLTQIQRLHLTSNNFTGELPVTLARLTTLQDIRLGDNLFFGKIPDFIQSWTSLQKLVIQGSGLSGPIPSGISLLENLTDLRISDLNGSEHSPFPQLNKMKLKYLILRNCNINGTLPTYLGTMTSLKNLDLSFNKLTGAIPSTYDALRKVDYIYLTGNLLNGPVPAWTEKADNVDISYNNFSIASQGSLTCQDGNVNLFASSMTPNDSGTVACLRSYVCPKTFYSLHVKCGGKIVTVNRSTYDDDSDAGGPARFHQSGIRNWAFSTTGNFMDNDGGDYYTSSNKSLLSMDNADLYMDARVSPISLTYYGFCLGNGNYTVNLHFAEIMFIDDQTFNSLGRRVFDIYIQGKLVKKDFNIVEEAGGIGKAVIKPFTVVVTSGTLEIRLYWAGKGTTSLPFRSVYGPLISAISVESDFPPPSENGSSISAGAVVGIVAAGAVVIIVVFGMLWWKGCLGKKSSLERELKSLDLRTGLFTLRQIKAATNNFDVANKIGEGGFGPVYKGCLSDGTLIAVKQLSSKSRQGNREFLNEIGMISALQHPYLVKLYGCCVEGDQLLLVYEYMENNSLARALFGPEEQQIKLDWPTRYKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIINGRNNTIHRQKEESFSILEWAHLLKEKGDLMELVDRRLGSDFNKEEVLVMIKVALLCTNVSAALRPTMSSVVSMLEGRTAVKEVVSETSEVLDEKKLETMRLYYHELNISKKSHGLLHLLLQQICIRYTWIHLTWRREIRDNGEKLHSFVSIICHELVHKILFFPVNPFVIPFWCVSSPPGCNILLICRKEHINDRQRSNSTFIMRTIKLHRFKNFRIMMRTL 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1263 1081 Pfam Malectin domain 402 585 IPR021720 -
Ssu8g1263 1081 CDD STKc_IRAK 668 935 - -
Ssu8g1263 1081 SUPERFAMILY L domain-like 72 343 - -
Ssu8g1263 1081 Gene3D Transferase(Phosphotransferase) domain 1 738 950 - -
Ssu8g1263 1081 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 289 359 - -
Ssu8g1263 1081 Pfam Leucine rich repeat 278 337 IPR001611 GO:0005515
Ssu8g1263 1081 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Ssu8g1263 1081 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 76 289 - -
Ssu8g1263 1081 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 382 955 - -
Ssu8g1263 1081 Gene3D Phosphorylase Kinase; domain 1 630 737 - -
Ssu8g1263 1081 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 76 289 - -
Ssu8g1263 1081 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 382 955 - -
Ssu8g1263 1081 SUPERFAMILY Protein kinase-like (PK-like) 646 941 IPR011009 -
Ssu8g1263 1081 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 289 359 - -
Ssu8g1263 1081 ProSiteProfiles Protein kinase domain profile. 662 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1263 1081 Gene3D Ribonuclease Inhibitor 199 265 IPR032675 -
Ssu8g1263 1081 SMART serkin_6 662 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1263 1081 Pfam Protein kinase domain 663 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1263 1081 Gene3D Ribonuclease Inhibitor 266 370 IPR032675 -
Ssu8g1263 1081 Gene3D Ribonuclease Inhibitor 31 198 IPR032675 -
Ssu8g1263 1081 Gene3D - 400 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1263 Ssu-Chr8 22631893 22668250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1263 22 963 Receptor kinase-like Gene Family AT1G53420 58.342 0.0 1058
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu8g1263 Pkinase 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1263 - - gmx:732563 1637.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1263 8 22631893 22668250 Ssu8g1263 8 22631893 22668250 ECH