Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1261 ATGGGGTTTGCGATGTCAAGCTCCAAACATGTGTCTGTGTTCTTCATCTTTGTTTCCCTGGCTTTGAATTGCTTCCAAAACTTCGGATCCAACGCTCAACTCATACCACAAGATGAAGTGAAATTACTACAAGCAATATCTGACAAGGTAGAGAACTTGAATTGGAAAGTTACACAACGTTCCTGCAAGGGGGACGGAGGATTTGATAACAGGAACATTTCAAGGGATCGGGATCAAGTCACAAGGAATGTCACGTGCGATTGCTCTTTCAACAGTAGGACTATTTGCCATGTGACATCGATTGCGCTCAAGGGTATCAATATAGCTGGAGCTATACCCAACGAGATTGGAAATCTAACTCAACTGACAATACTTGATCTCACTCGGAATTATCTCAATGGCTCAATTCCAAAAAGCCTTGGACGCCTCACATCACTTGTCACTCTGTCACTTTTGGGAAATCGACTAACTGGTTCAATTCCCTCAGAAATTGGTGACATGGCTAGTCTGCAAGAACTGAACTTAGAAGATAATCAACTTGAGGGACCTCTTCCCCCGAGCCTTGGAAATTTGAGCAACTTGCTGAGAATGCTTCTTTCTGCAAATAATTTAACAGGGACAATACCAGAAGCATATGGAAATCTAAAGAATCTCATGCAGTTTAGGATAGATGGGAGCAGTTTATCAGGGAAGATACCCAGTTTTATTGGGAACTGGACCAAACTTACAAGATTGGATTTGCAGGGCACATCCTTGGAAGGTCCAATTCCTTCTGTCATATCTGACTTGACAAATTTGACAGAATTGAGAATATCTGATTTGAAGGGACCAACTATGAAATTTCCTGATCTGAAGGATTTGAAAAGCATGCTAAAACTGGAATTGAGAAATTGTTTAATCACTGGTACCATTCCAAGCTACATCGGAgaaatgaaaagtttaaaaactctaGATCTGAGCTCCAACAAGCTGACTGGTTCAATCCCAGATTCATTTCAGGACTTGGGAAAATTGAATTACTTGTTTCTGACTAACAATTCTCTAAGTGGAAAGATTCCTGATTGGATACTGCCCATAAAACAGAATATTGATTTATCTTTGAACAATTTTACGGAGACTTCTGCATCTAGCTGCCAGATCTTGGATGTGAACATAGCCTCCAGCCACTCTCCCTCAGCAAACACTTCATTATCTTGTTTGAAGAGGGACCTACCTTGTTCAGGAAAACCCCAGTTTCATTCACTGTTCATAAACTGTGGAGGACCTGCAGCAGAGTTTGAGGGCAATGAATATGAAGACGACCTCAGTCTACGTGGCATTTCAAACTTTGTTCAGAGTAATAGTGGCAAATGGGCTTATAGCAGCACTGGAGTATATCTAGGAAATGAAAAAGCTGATTATGTAGCAACAAATCAGTTTTCTTTGAATATTAATGGCCCTGGATACTACCAAACAGCCCGCATGGCCCCTTTGTATCTTAATTACTATGGCCTTTGTATGCTGAACGGCAATTATAAGGTGAAACTTCATTTTGCTGAGATAGATTTCTCTGGTGACCATACGTATAATAGCCTGGGAAAGCGTGTATTTGATGTTTCAATTCAAGGTATTacatatttgaaagattttaataTTGTGGAAGAAGCTGGTGGAGTTGGTGTGGGAATCACTAGGGAGTTTAATGTGAATGTTACTGACAGCACCTTGGAAATCCACTTATCCTGGGCAGGGAAAGGAACTAATGCCATTCCTATAAGAGGTGTATATGGACCTCTTATATCTGCTATCACTGTGACCCCAAACTTTAAAGTTCCTTCAAATGGCCTGTCTACTGGAGCAATTGTTGGAATTGTGGCTGGGGCATGTGTGCTTGTCATATTGATACTCTTTGTTCTTTGGAAGATGGGTTTCCTTTGTGGGAAAGATGAAACAGACAAAGAACTTCTAGATCTGAAAACGGGTTATTTCAGTTTAAGACAAATTAAAGCTGCTACTGATAACTTTGATCCAGCAAATAAGATAGGTGAAGGAGGCTTTGGACCAGTATACAAGCAATATGAAGTTTTGAAACATTGGGGTGGTTACATGGCTCCTGAGTATGCTATGCGGGGTTACTTAACTGACAAAGCAGATGTCTATAGCTTCGGAGTTGTAGCTTTAGAGATTGTTAGTGGAAAGAGCAACACAAATTACAGGCCAAAGGAGGAGTTTGTATATCTTTTAGATTGGGCCTATGTTCTCCAAGAGCAAGGAAACCTTCTGGAGTTGGTGGATCCTAGTCTTGGTTCAAGGTACTCCACAGAAGAGGCCATGAGAATGCTTCAGTTGGCACTATTGTGCACCAATCCTTCTCCCACTCTTAGACCACCTATGTCATCAGTAGTGAGCATGCTTGAGGGAAAAACTCCAATTCAAGCACCAATAATCAAACGCAGTGACGGTGCACAAGATATAAGATTTAAAGCCTTTGAGACGTTATCACAAGACAGCCAAACTCATGTTTCTTCTGCATTCTCACAAGATAGTATAGAGCAAAGCAGCAAATCCATGGGGGGACCATGGGCTGACTCCTCCATATCTCTTCCAACTGGAAACGATTATTCTTCAACCAATAAACTTATTTGA 2625 0.4057 MGFAMSSSKHVSVFFIFVSLALNCFQNFGSNAQLIPQDEVKLLQAISDKVENLNWKVTQRSCKGDGGFDNRNISRDRDQVTRNVTCDCSFNSRTICHVTSIALKGINIAGAIPNEIGNLTQLTILDLTRNYLNGSIPKSLGRLTSLVTLSLLGNRLTGSIPSEIGDMASLQELNLEDNQLEGPLPPSLGNLSNLLRMLLSANNLTGTIPEAYGNLKNLMQFRIDGSSLSGKIPSFIGNWTKLTRLDLQGTSLEGPIPSVISDLTNLTELRISDLKGPTMKFPDLKDLKSMLKLELRNCLITGTIPSYIGEMKSLKTLDLSSNKLTGSIPDSFQDLGKLNYLFLTNNSLSGKIPDWILPIKQNIDLSLNNFTETSASSCQILDVNIASSHSPSANTSLSCLKRDLPCSGKPQFHSLFINCGGPAAEFEGNEYEDDLSLRGISNFVQSNSGKWAYSSTGVYLGNEKADYVATNQFSLNINGPGYYQTARMAPLYLNYYGLCMLNGNYKVKLHFAEIDFSGDHTYNSLGKRVFDVSIQGITYLKDFNIVEEAGGVGVGITREFNVNVTDSTLEIHLSWAGKGTNAIPIRGVYGPLISAITVTPNFKVPSNGLSTGAIVGIVAGACVLVILILFVLWKMGFLCGKDETDKELLDLKTGYFSLRQIKAATDNFDPANKIGEGGFGPVYKQYEVLKHWGGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSRYSTEEAMRMLQLALLCTNPSPTLRPPMSSVVSMLEGKTPIQAPIIKRSDGAQDIRFKAFETLSQDSQTHVSSAFSQDSIEQSSKSMGGPWADSSISLPTGNDYSSTNKLI 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1261 874 Pfam Protein tyrosine and serine/threonine kinase 694 797 IPR001245 GO:0004672|GO:0006468
Ssu8g1261 874 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 386 686 - -
Ssu8g1261 874 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 76 301 - -
Ssu8g1261 874 SMART LRR_typ_2 119 143 IPR003591 -
Ssu8g1261 874 SMART LRR_typ_2 167 191 IPR003591 -
Ssu8g1261 874 SMART LRR_typ_2 311 334 IPR003591 -
Ssu8g1261 874 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515
Ssu8g1261 874 Pfam Leucine rich repeat 292 348 IPR001611 GO:0005515
Ssu8g1261 874 ProSiteProfiles Leucine-rich repeat profile. 313 335 IPR001611 GO:0005515
Ssu8g1261 874 SUPERFAMILY Protein kinase-like (PK-like) 694 806 IPR011009 -
Ssu8g1261 874 Pfam Malectin domain 415 596 IPR021720 -
Ssu8g1261 874 MobiDBLite consensus disorder prediction 835 861 - -
Ssu8g1261 874 Gene3D Ribonuclease Inhibitor 276 401 IPR032675 -
Ssu8g1261 874 Gene3D Ribonuclease Inhibitor 43 200 IPR032675 -
Ssu8g1261 874 PANTHER - 386 686 - -
Ssu8g1261 874 PANTHER - 300 356 - -
Ssu8g1261 874 PANTHER - 693 857 - -
Ssu8g1261 874 PANTHER - 76 301 - -
Ssu8g1261 874 SUPERFAMILY L domain-like 93 358 - -
Ssu8g1261 874 Gene3D - 413 601 - -
Ssu8g1261 874 Gene3D Transferase(Phosphotransferase) domain 1 669 813 - -
Ssu8g1261 874 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 300 356 - -
Ssu8g1261 874 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 693 857 - -
Ssu8g1261 874 Gene3D Ribonuclease Inhibitor 201 275 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1261 Ssu-Chr8 22565182 22576054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1261 694 863 Receptor kinase-like Gene Family AT1G53440 72.254 4.03e-74 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu8g1261 Malectin 8.9e-38 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1261 - - gmx:100783862 1088.94