Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1259 ATGGCACCTCAATTGGCAGCAACCcactcttctcttctccttgtTCCTCCCTCTTCTGCTTCTCTCTGTTTCAGAAGGAATAAAGATTTGATTCTAGAAAGATGCACTACAATCTACAGGAAAAAGAATCATGCCATCACAGCTTTGGCAGGCAATTCTCTTGGAAAATCAGCTATCCAACTCACTGCTGTTTCATCCCCACTATTTGCTGATAAAGAAGCTCGCCTCTCACTCAGACTTCCTTTGTCTCGAAGATGCAATTCTACGATCCGTGGACAAGCATTTATATATCATTCTTCTGGTTTCCGAATCCCAGCAAATGCTGAGAAGCCAGAGTGGTGGTGGAGGACTTTATCCTGTGTTCCCTATCTAATAGCATTGCAGTTATCTGCAACTGGGATTTATCTAGAAcctttcattgaaaaatttCCATTCTTtcagaatttgattttttatatccCAGGAGCTGTCAACCGATTACCAAACTGGTTCCCTATGTTATATTGCTATGTGGCTATTGTATGGGTGGTAAAGAACAAGGATTTGCCCCTTATCTTCAGATTCCATGTAATGATGGGAATGTTACTGGAACTTGCTCTGCAGATAGTGTGGATTTCAAGCAATTTCATGCCACTTATACACTTCAAGGGAACATTGGGGATGTATTACTGGGCTGGTGTGGCGTTGgcatatattttgataatgGCAAGGTGCATAAGGTGTGCGCTTCTGGGTACATTTGTGAGTATCCCGGTACTTAGTGAATCAGCTTTCCTTCATTCTCTATTCAGTTTAGGAGGATTCCAACGGCCATTTTAG 819 0.3907 MAPQLAATHSSLLLVPPSSASLCFRRNKDLILERCTTIYRKKNHAITALAGNSLGKSAIQLTAVSSPLFADKEARLSLRLPLSRRCNSTIRGQAFIYHSSGFRIPANAEKPEWWWRTLSCVPYLIALQLSATGIYLEPFIEKFPFFQNLIFYIPGAVNRLPNWFPMLYCYVAIVWVVKNKDLPLIFRFHVMMGMLLELALQIVWISSNFMPLIHFKGTLGMYYWAGVALAYILIMARCIRCALLGTFVSIPVLSESAFLHSLFSLGGFQRPF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1259 272 Pfam Chloroplast import apparatus Tic20-like 85 257 IPR005691 -
Ssu8g1259 272 PANTHER PROTEIN TIC 20-II, CHLOROPLASTIC 11 272 IPR005691 -
Ssu8g1259 272 PANTHER PROTEIN TIC 20-IV, CHLOROPLASTIC 11 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1259 Ssu-Chr8 22536630 22538951 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1259 36 271 Chloroplast and Mitochondria Gene Families AT4G03320 48.739 1.64e-78 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1259 - - aprc:113869676 456.062