Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1258 ATGACGTCGGGGACGAGGCTACCCACGTGgaaggagagagagaacaacaagaggagagagagaagaagaagagccaTAGCGGCGAAGATCTTCGCGGGTCTGAGGATGTATGGAAACTTCAAACTCCCCAAACACTGTGACAACAACGAAGTCCTCAAAGCTCTGTGCAACGAAGCTGGTTGGACCGTTGAACCCGATGGAACCACTTACCGCAAGgATATAGTTAACTGGAAGAAGATGAGATCTGAGCCACGGCAGGGATGCAAGCCTTTAGAGCGCATGGACATAGTTGGTGGATCATCAGCAGCAAGCCCTTGCTCATCTTACCATCCAAGTCCATGTGCTTCCTACAACCCAAGCCCTGGCTCATCTTCCTTCCCTAGTCCATCCTCATCCCCTTATACCACAATTCCTAATGCTGATGGCAATTCCCTCATTCCATGGCTCAAGAACCTCTCCACTGCCTCATCTTCAGCATCATCTCCCAAGCTTCCCCATCTCTACCTCCACAGTGGCTCCATCAGTGCTCCTGTCACACCTCCACTGAGCTCTCCAACCGCCAGAACACCGCGAATCAATGCTGAGTGGGACGATCAGTCTGCGCGGCCGGGGTGGACCAGACAGCAGCACTATTCATTCCTGCCATCTTCTAGTCCTCCAAGCCCCGGCCGCCAGGTTGTTGACCCTGAATGGTTTGCTGGGATCAAACTTCCCCATGTTAGTCCAACTTCACCAACATTCAGCTTGGTCTCTTCAAACCCTTTTGCCTTCAAGGATGATGGTTTAGCCGGCAGCGGTTCGCGAATGTGGACTCCGGCTCAAAGTGGAACATGCTCTCCTGCTGTTGCACCAGGCTCTGATCACACTGCTGACATTCCAATGTCTGAAGCTGTTTCAGATGAATTTGCATTTGGAAGCAACATGTTGGGGCTTGTGAAGCCATGGGAAGGAGAAAGGATCCATGAGGAATTTGGATCAGATGATCTTGAACTCACACTTGGAAACTCAAAGACCAGatGA 1020 0.4902 MTSGTRLPTWKERENNKRRERRRRAIAAKIFAGLRMYGNFKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKDIVNWKKMRSEPRQGCKPLERMDIVGGSSAASPCSSYHPSPCASYNPSPGSSSFPSPSSSPYTTIPNADGNSLIPWLKNLSTASSSASSPKLPHLYLHSGSISAPVTPPLSSPTARTPRINAEWDDQSARPGWTRQQHYSFLPSSSPPSPGRQVVDPEWFAGIKLPHVSPTSPTFSLVSSNPFAFKDDGLAGSGSRMWTPAQSGTCSPAVAPGSDHTADIPMSEAVSDEFAFGSNMLGLVKPWEGERIHEEFGSDDLELTLGNSKTR 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1258 339 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 153 IPR008540 -
Ssu8g1258 339 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 339 IPR033264 GO:0003700|GO:0006351|GO:0009742
Ssu8g1258 339 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 339 - -
Ssu8g1258 339 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1258 Ssu-Chr8 22525975 22530175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1258 1 339 BZR Transcription Factor Family AT1G78700 67.622 1.15e-136 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Ssu8g1258 BES1_N 8.4e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1258 - - gmx:100795369 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1258 8 22525975 22530175 Ssu8g1258 8 22525975 22530175 ECH