Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1250 ATGGAGAATCAGCCTTCAAATGGAAGAaaggcaatggaagaagagCTAGTCAAAGGGCGTGACATAACAAACCACTTACTTGAAATACTTGTTCCTAAATGCAACACTCATCATGGAGGTGTACAAGTGGAAGGGTTAGTGTTACCATTTGCTGAGGATCTTGTTCGCAAGGTACTCAGATCATTCACAAATACCCTTTTGCTATTGAACACCGATATGGATGTCTCCGATGAGGTTGTTATGCCCACCACTATCAAAGATGTCTCTTCGTCCGTGAAATGCCCAAAGCCTGAGGATAAggattacaataattttttaaacgcTAAAAGACGAAGAGGGTGCCACAAATCAAGTTCACCAACATGGGAGAATAACAGCTCAATTCTGACGGAAGATGGCTATGTTTGGAGAAAGTATGGacaaaaaatgacaatgaaTGCAAAATACCTCAGGAGCTACTACAGATGCACTCACAAgtatgatgagggttgtccagCAATCAAACAGGTTCAGAGAATTCAAGAGGACCCTCCATTGTACCGGACAACATATTATGGCCATCACAATTGCAAAAGCTCTTCAAGTCCAGAGATAATGATCATGGAACCACCTTCTTCTTCTGGCTCTTCTAAGGTCCTCAGCTTCAGTAACACCTTCCCAAGCAAAGAAGAATACCCATTTTCATCATCACTTTCTTCATCCACGAAACAGGAGCCTATGGAAGTGATTCCGGAGGGCCAAAGTAGTGATCACAACCAATTACCCTCATCAAATTACCTCCTGTTATGTGACTATGAACTTGATTTCAATTATTCGAGGCAGGTTACTATGCTATCCTCCATTGATCAATCTATTAAATTCGATACAGTTTACGGTAGCGGTCTGGACTTTGATGGCTAG 900 0.3856 MENQPSNGRKAMEEELVKGRDITNHLLEILVPKCNTHHGGVQVEGLVLPFAEDLVRKVLRSFTNTLLLLNTDMDVSDEVVMPTTIKDVSSSVKCPKPEDKDYNNFLNAKRRRGCHKSSSPTWENNSSILTEDGYVWRKYGQKMTMNAKYLRSYYRCTHKYDEGCPAIKQVQRIQEDPPLYRTTYYGHHNCKSSSSPEIMIMEPPSSSGSSKVLSFSNTFPSKEEYPFSSSLSSSTKQEPMEVIPEGQSSDHNQLPSSNYLLLCDYELDFNYSRQVTMLSSIDQSIKFDTVYGSGLDFDG 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1250 299 ProSiteProfiles WRKY domain profile. 125 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g1250 299 MobiDBLite consensus disorder prediction 226 251 - -
Ssu8g1250 299 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 289 IPR044810 GO:0003700
Ssu8g1250 299 Gene3D WRKY domain 116 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu8g1250 299 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 289 - -
Ssu8g1250 299 Pfam WRKY DNA -binding domain 131 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g1250 299 SUPERFAMILY WRKY DNA-binding domain 128 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu8g1250 299 SMART WRKY_cls 130 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1250 Ssu-Chr8 22323922 22333638 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1250 1 298 WRKY Transcription Factor Family AT3G56400 31.310 4.43e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu8g1250 WRKY 2.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1250 - - gmx:102663141 396.741