Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1249 ATGGACCAAACATTGGTACCTTTCACTGTCACAACATGCAAGGCCCAAGGGTATTATTGTCTAACAGATGGCTATGTTCTCAGCATGAAGTTAGCAGAGTCAGCTCATCGTGCATCTCCACGGAAACAAACACACTGCTTCCGTGCCCACGTTCTGGAGCGTTCCAATCATAAAGGACTCCTCTTGCTTACGTTGCAGATTTTCACTGGGATAATGGAGACTCATCTTCCAAATGGCAAAAGGGCAATGGAAGAAGAGCTAATCAGAGGGCGTGACATGGCAAATCTGTTACTAGAAGTACTTGCTCGTGATAAATCGAACAGCCATCTTGAAGAGAAAGGTGGGTCAAAGTTAGTATTACCATTTGTTGAAGATCTTGTGCGCAAGATCCAGTGTTCTTTCACAAATACCCTTTTGCTTTTGAACTCCAATAACGATGTCTCCCATGAGGTGGCGGCGTCTATCACTGATGTCTATTCGTCCACGAGTTGCCCAAATCTGGAGTCTATGGATGAAACTTGCAAGCGTCGCAAGATTCTCAACACGAAAAATCGAAGAGGGTGCTACAAGAGaaaATCAACAGCGCCAGCTTGGGAGAAGGACAGCTTAATACCGACTGAAGATGGCTATGTGTGGAGAAAGTACGGACAAAAATTGACATTGAAGGCCAAATACCTCAGGAGCTACTACAGGTGCACTTACAAGAAAGATCAGGGATGCCAAGCAATCAAACAGGTGCAGAGAATTCAAGATGACCCTCCTTTGTACCGGACAACCTATTATGGCCGTCACACTTGTAAAAGCCCTTTGAATCCTGAAATTATTTTGGAGCCTCTTTCACCTTCTGCCTCTTCCACATTACTTAGCTTTACAAACAGCCTTCAAAGCAAACAAGAAAACCCATTTCCCTCATCACTATTTGCATCAACAAAACATGAGCCCATGGAAGTAATTCACGATGACCATAGTGCTCAAAATCAGTTGTCCTCATCCGAAGACCTcttattatatgattatgaaATTTATTCCGACTATTCGAGGCATGTCGCTATGTTATCATCGACTGAACCCGTTGAATTTGAGAATGTTTATGAACAGCTTGGATTTTGA 1110 0.4288 MDQTLVPFTVTTCKAQGYYCLTDGYVLSMKLAESAHRASPRKQTHCFRAHVLERSNHKGLLLLTLQIFTGIMETHLPNGKRAMEEELIRGRDMANLLLEVLARDKSNSHLEEKGGSKLVLPFVEDLVRKIQCSFTNTLLLLNSNNDVSHEVAASITDVYSSTSCPNLESMDETCKRRKILNTKNRRGCYKRKSTAPAWEKDSLIPTEDGYVWRKYGQKLTLKAKYLRSYYRCTYKKDQGCQAIKQVQRIQDDPPLYRTTYYGRHTCKSPLNPEIILEPLSPSASSTLLSFTNSLQSKQENPFPSSLFASTKHEPMEVIHDDHSAQNQLSSSEDLLLYDYEIYSDYSRHVAMLSSTEPVEFENVYEQLGF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1249 369 Pfam WRKY DNA -binding domain 207 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g1249 369 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 72 362 - -
Ssu8g1249 369 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 72 362 IPR044810 GO:0003700
Ssu8g1249 369 SUPERFAMILY WRKY DNA-binding domain 203 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu8g1249 369 SMART WRKY_cls 206 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g1249 369 ProSiteProfiles WRKY domain profile. 207 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g1249 369 Gene3D WRKY domain 193 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1249 Ssu-Chr8 22284009 22286206 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1249 86 354 WRKY Transcription Factor Family AT3G56400 30.272 4.52e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu8g1249 WRKY 5.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1249 - - gmx:100792193 440.269