Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1248 ATGGAGAATCAGCTTCCAAATGGCAAAAGGGCAATGGAAGAAGAGCTGATCAGAGGGCGTGATATGGCAAATCAATTGCTTGAAGTATTTGTTCATAATAAATTGAACAGTCACGTTGAAGAGGGGGGTGGGTCCAAGTCAGTATTACCATTAGTTGAAGATCTTGTGCGCAAGGTGTTGTGTTCATTCACAAATGCCCTTCTGCTTTTGAACTCCAATTACGATGTCTCCCAGGAGGTGGCGGCGTCTATCACTCTCAGAGATGTCTCTTCGTCAACGAATTGCCCAAAGCTGGAGTCTATGGATGAAAGTTGCAAGAGTCGCAATATTCTCAACACTAAAAATCGAAGAGGGTGCTACAAGAGAAAATCAATTGCGCCAACTTGGGAGAAGGACAGCTCAACACTGACTGAAGATGGCTATGCATGGAGAAAGTACGGACAAAAAATGACATTGCACGCCAAATACCTCAGGTATTGTGCTACTTACAAGAAAGATCAGGGATGCCAAGCAATCAAACAGGTGCAGAGAATTCAAGATGACCCTCCTTTGTACCGGACAAGCTATTATGGCCGTCACACTTGTAAAAGCCCTTTGAATCCTGAAATTATTTTGGAACCTCTTTCACCTTCTGCCTCTTCCACATTACTTAGCTTTACTAACAGCCTTCAAAGCAAACAAGAAAACCCATTTCCCTCATCACTATTTGCATCAACAAAACATGAGCCCATGGAAGTAATTCACGATGACCATAGTGCTCAAAATCAGTTGTCCTCGTCCGAAGACCTcttattatatgattatgaaATTTATTCCGACTATTCGAGGCATGTTGCTATGTTATCATCGACTGAACCcgttgaatttgaaaatgtttatgAGCAATTTGGATTTTGA 897 0.408 MENQLPNGKRAMEEELIRGRDMANQLLEVFVHNKLNSHVEEGGGSKSVLPLVEDLVRKVLCSFTNALLLLNSNYDVSQEVAASITLRDVSSSTNCPKLESMDESCKSRNILNTKNRRGCYKRKSIAPTWEKDSSTLTEDGYAWRKYGQKMTLHAKYLRYCATYKKDQGCQAIKQVQRIQDDPPLYRTSYYGRHTCKSPLNPEIILEPLSPSASSTLLSFTNSLQSKQENPFPSSLFASTKHEPMEVIHDDHSAQNQLSSSEDLLLYDYEIYSDYSRHVAMLSSTEPVEFENVYEQFGF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1248 298 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 291 - -
Ssu8g1248 298 ProSiteProfiles WRKY domain profile. 132 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g1248 298 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 291 IPR044810 GO:0003700
Ssu8g1248 298 Gene3D WRKY domain 127 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu8g1248 298 SUPERFAMILY WRKY DNA-binding domain 133 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu8g1248 298 SMART WRKY_cls 137 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g1248 298 Pfam WRKY DNA -binding domain 138 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1248 Ssu-Chr8 22269952 22271415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1248 15 283 WRKY Transcription Factor Family AT3G56400 29.866 9.97e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu8g1248 WRKY 5.2e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1248 - - gmx:100792193 457.988