Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1247 ATGGAGAATCAGCCTTCAAATGGAAGAAAGGCAATAGAAGAAGAGCTAGTCAAAGGACGTGACATAGCAAACCAGTTACTCGAAGTACTTGTTCATAAATCCAACACCTATGATGGAAACGTACAAGGGTCAATGCATCCATTTGTTGAAGATCTTGGGCGCAAGGTGCTGGGTTCGTTCACAAACACCCTTTTGCTATTGAACGACAATAGTGATGTCTCCAGTGAGGTTGTTGTGCCTATCACTATCAAAGATGTCCCTTCGTCCGTGAAACGCCCGAAGCCTCGGGATACGGATGAGGCTTGCAAGAGTTTCTTCGACGCTAAAAATCGAAGAGGGTGCTACAAGAGAAAATCAAGGACACCAACATGGGAGACGAACAGCTCAATTCTGATGGAAGATGGCTATGTGTGGAGAAAGTatggacaaaaaataacaatgaatgCAAAATACCTCAGGAGCTACTACAGATGCACTCACAAgtatgatgagggttgtccagCAATCAAACAGGTTCAGAGAATTCAAGAGGACCCTCCATTGTACCGGACAACATATTATGGCCATCACAATTGCAAAAGCTCTTCAAGTCCAGAGATAATGATCATGGAACCACCTTCTTCTTCTGGCTCTTCTAAGGTCCTCAGCTTCAGTAACACCTTCCCAAGCAAAGAAGAATACCCATTTTCATCATCACTTTCTTCATCCACGAAACAGGAGCCTATGGAAGTGATTCCGGATGACCATATTGTTCACAACCAATTGCCCTTATCGGATTACCTCTTGTTATGTGACTATGAACTTGATTTCAATTATTCGAGGCATGTTACTATGCTGTCATCCGCAGAATCTGTTCAATTTGATAATGGAAGCAGTTTGAATTTTGATGGCTAA 894 0.4083 MENQPSNGRKAIEEELVKGRDIANQLLEVLVHKSNTYDGNVQGSMHPFVEDLGRKVLGSFTNTLLLLNDNSDVSSEVVVPITIKDVPSSVKRPKPRDTDEACKSFFDAKNRRGCYKRKSRTPTWETNSSILMEDGYVWRKYGQKITMNAKYLRSYYRCTHKYDEGCPAIKQVQRIQEDPPLYRTTYYGHHNCKSSSSPEIMIMEPPSSSGSSKVLSFSNTFPSKEEYPFSSSLSSSTKQEPMEVIPDDHIVHNQLPLSDYLLLCDYELDFNYSRHVTMLSSAESVQFDNGSSLNFDG 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1247 297 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 290 - -
Ssu8g1247 297 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g1247 297 Pfam WRKY DNA -binding domain 133 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g1247 297 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 290 IPR044810 GO:0003700
Ssu8g1247 297 SUPERFAMILY WRKY DNA-binding domain 128 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu8g1247 297 ProSiteProfiles WRKY domain profile. 127 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g1247 297 Gene3D WRKY domain 103 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1247 Ssu-Chr8 22257755 22259530 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1247 15 196 WRKY Transcription Factor Family AT3G56400 37.705 7.30e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu8g1247 WRKY 2.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1247 - - gmx:102663141 388.267