Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1232 ATGAAGATAATTAATTCGATAATTGTGGTCAGACtctattatgaattatgtactgtcaatgCTATTATTGatgaaattagtaaaattatccGTGAATGCATTGAGCAATATAATACCGaagtaaaaattgtaaatacgGGTACTGTACTTCAAATAGGCGATGGGATTGCTTGTATTTATGGTCTTGATGAAGTAATGGGGGGTGAATTAGTGGGATTTGAAGAGGATGATACAGCACAGTTTGATCAGCTCAGAGCTGTACGCTTCCAGGATGCTATTAACAAAGCAATACCACGAAGAAAACTTAACCGTGTAACCAGTAAAGATTCTGCAGAAACCTCTGAATCAGGTGACATGGAGCTCAGAGAACCTGAGGAGCTACGAGCTGAGCCTCTAAGAGTTCAACAACAACTCTTGGATGATGAAACACGTACCCTTCagGTGGAATTGACTAGTCTTCTCGATACAGCTCAAGAAACCAAAACTAAGATGGTGGAAATGTCTGCACTAAATCACCTCATGTCTACACATGTTTTGCAACAAGCTCAGCAAATTGAGCATTTGTATGAACAGGCCGTTGAAGCTACTAAGAATGTGGAGCTTGGTAACAAAGAACTCTCAAAAGCCATTCAGCGGAATAGCAGCAGCAGGACATTTCTTTTACTGTTTCTATTTGTACTTACTTTTTCGATCCACTTTCTTGATTGGTATAGTTAA 717 0.364 MKIINSIIVVRLYYELCTVNAIIDEISKIIRECIEQYNTEVKIVNTGTVLQIGDGIACIYGLDEVMGGELVGFEEDDTAQFDQLRAVRFQDAINKAIPRRKLNRVTSKDSAETSESGDMELREPEELRAEPLRVQQQLLDDETRTLQVELTSLLDTAQETKTKMVEMSALNHLMSTHVLQQAQQIEHLYEQAVEATKNVELGNKELSKAIQRNSSSRTFLLLFLFVLTFSIHFLDWYS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1232 238 PANTHER SYNTAXIN-18 78 238 - -
Ssu8g1232 238 PANTHER SYNTAXIN-18 78 238 - -
Ssu8g1232 238 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 28 79 IPR036121 GO:0046034|GO:1902600
Ssu8g1232 238 MobiDBLite consensus disorder prediction 104 125 - -
Ssu8g1232 238 Gene3D - 141 234 - -
Ssu8g1232 238 SUPERFAMILY SNARE fusion complex 157 210 - -
Ssu8g1232 238 Gene3D - 20 91 IPR023366 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1232 Ssu-Chr8 21920409 21922050 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1232 20 238 SNARE and Associated Proteins AT1G51740 56.710 1.54e-61 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1232 K08492 - gmx:100778011 271.552