Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1229 ATGAAGAGGAACAGTTTGATGAAAGATTGCACTCACTGTTGTGCCAACAAGAGCCCAACAAAAGAGTCCATTCATGTTGTCAACTGCTACAACAAGAATCAAATGGCAAAGGAGTTTTGGGAGTGCAGCAACAACTCTCACAGCAATGTAGATCAGGACTATGAGAATGGCTTCCCATGGCCACCAAGATCATACACTTGTAGCTTCTGCAGAAAGGAGTTCAAGTCTGCTCAGGCACTTGGTGGACACATGAATGTTCATAGGAGGGATAGAGCAAGGTTGAGGCAGTCACCCCCAACTGAAGGTCAAGGCCCTATGCTAAACCTTAACCTTGACCCTACAACTAACCCTAACAACTCAACCTCATCTTATTTGTCCTTGTTaccatcatcttcttcttcttcttctgcagTTCTCAAGCCTGTCACTTGCACATTACCCTTGTTTGTTTCTCCCTCTCCTCCTTCACCTTCTTCTGAGTTGAGGAGATGGGTTTTTGTGGATGGCATTCTGTTGAACCCTTTGAGCACAAAGACCCCAGAGAACTCTAAGTCAAAGATTCAAGAATCTTTATCATCTGGTGTTGGAGAATATGATGCTTTTGCAAGGGAAGATGGGTGCAAAATGTTGAAGAAAGGTGAGATTCTCAGGATGGACTTGGAGATAGGTTTGCCTAGAGATTATGATTTAGATCTGGAGCTTCGTTTGGGTACTACTTACTCTTAG 726 0.4201 MKRNSLMKDCTHCCANKSPTKESIHVVNCYNKNQMAKEFWECSNNSHSNVDQDYENGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSPPTEGQGPMLNLNLDPTTNPNNSTSSYLSLLPSSSSSSSAVLKPVTCTLPLFVSPSPPSPSSELRRWVFVDGILLNPLSTKTPENSKSKIQESLSSGVGEYDAFAREDGCKMLKKGEILRMDLEIGLPRDYDLDLELRLGTTYS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1229 241 Pfam C2H2-type zinc finger 65 89 - -
Ssu8g1229 241 PANTHER OS07G0101800 PROTEIN 10 241 - -
Ssu8g1229 241 MobiDBLite consensus disorder prediction 101 126 - -
Ssu8g1229 241 SMART c2h2final6 65 87 IPR013087 -
Ssu8g1229 241 MobiDBLite consensus disorder prediction 82 126 - -
Ssu8g1229 241 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Ssu8g1229 241 Gene3D Classic Zinc Finger 33 104 - -
Ssu8g1229 241 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 10 241 - -
Ssu8g1229 241 SUPERFAMILY beta-beta-alpha zinc fingers 62 91 IPR036236 -
Ssu8g1229 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1229 Ssu-Chr8 21883550 21884275 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1229 40 237 C2H2 Transcription Factor Family AT3G23130 41.584 2.51e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu8g1229 zf-C2H2_6 1.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1229 - - var:108333719 345.51