Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1222 ATGAGtacttctccttctccttcttcaccCTGCGTGGCCTTCGCGGAATTCTACGAGTCGTGGTTCGCGCAGCTGCAGGAGCTGGTGCAGCAGCTGAGGGGGGAGCGGAAGGAGGAGGCGATGGAGAAGGTGATGCGGCACCACCAGAGCTACTACGGAGCCAAGTCGGCGGCCGCGGAGAAGGACCCCCTCAGCGTGTTCCTCTCTCCCTGGGCCACCACGCTCGAGCGCTCCCTCCACTGGATCACCGGCTGGCGCCCCACCACCGCCTTTCACCTCATCTACACCGAGTCCTCCCTCCTGTTCGAGTCCCACATCATCGACATCCTCCAAGGCCTCCGCACCGGCGACCTCGGCGACCTCTCTCCCTCCCAGTTCCGCCGCGTCAGCGACCTACAATGTGACACTgtgAAGGAGGAGAATGCAATAACGGAAGAGCTATCAGAGTGGCAGGACAGTGTGAGCGAGATGATGGGTCCAGGCGCGGACATCAACGGGAAGATCGGACGGCTGGCATGCATTATAAAGAAAGCAGACGATCTACGGTTGAGAACGTTGCGGAGCGTGGTGGGGTTGCTGTCGCCGCAGCAGGCTATCGAGTTCTTGATCGCTTCGGCGGAGTTGCTCGTTGGGATACGCGGTTGGGGATTGAATCACGACCGTGCACGTCGCAGATGA 678 0.5885 MSTSPSPSSPCVAFAEFYESWFAQLQELVQQLRGERKEEAMEKVMRHHQSYYGAKSAAAEKDPLSVFLSPWATTLERSLHWITGWRPTTAFHLIYTESSLLFESHIIDILQGLRTGDLGDLSPSQFRRVSDLQCDTVKEENAITEELSEWQDSVSEMMGPGADINGKIGRLACIIKKADDLRLRTLRSVVGLLSPQQAIEFLIASAELLVGIRGWGLNHDRARRR 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1222 225 PANTHER DNA-BINDING PROTEIN-LIKE PROTEIN 10 224 - -
Ssu8g1222 225 Pfam Seed dormancy control 25 96 IPR025422 GO:0006351|GO:0043565
Ssu8g1222 225 Coils Coil 22 42 - -
Ssu8g1222 225 ProSiteProfiles DOG1 domain profile. 11 222 IPR025422 GO:0006351|GO:0043565
Ssu8g1222 225 PANTHER - 10 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1222 Ssu-Chr8 21782269 21783505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1222 41 204 bZIP Transcription Factor Family AT5G06960 25.967 8.55e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1222 - - gmx:778192 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1222 8 21782269 21783505 Ssu8g1222 8 21782269 21783505 ECH