Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1220 ATGTCGCTGAGGAAGGTCTTCCGCTCCCGCAAGTTCTCCAGGTCGTTCAAGGAGGCGACGGCGCCGGTGGCGGCCGTCGGCGAGGGTGGGGGCGGCTGCGGAGGCGGCGGGGGCATGGATGCGGCGCACGGGAATGGGTGGTCGAACATGCTGCCGGAGATCCTCGGGGAGATCGTGCGGCGCGTGGACGCCGCCGAGGAGCAGTGGCCGAACCGGCAGAGCGTCGTGGCGTGCGCGTGCGTGTGCAAGCGCTGGAGAGACATCACGCGCGAGATCGTGCGTGAGCCCTCGCACGCCGGCAAAATCACCTTCCCTTCGTGCCTTAAACAGCCAGGACCACGTGTTGTTCCCCACCAGTGTCTTATAAAGCGGAACAAGAGGACCTCAACGTTTTATCTATATCTTGCACTTACACCATCATTCACAGATAAAGGGAAGTTTCTGCTAGCGGCTAGGAGATATAGATGTGGTACCCATACTGAGTATATAATTTCACTTGATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGTTGAGCTCGGATTTTCTTGGCACCAACTTCACAATATATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGTAGAGCCAGCCGTCGGTTCGCCAGCAAGCAGATAAGCCCGCAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGAATGGTTTGCTCATTGAATTGTCCCGTCTCATCATCATCTACTGGTGAAAGTTCAGATAGCACTTCTCTTGATGGCCATAAGATGCACGATAAAGAACATGCTGCTGCTGGCCACACAATCTTGAAGAATAAAGCTCCAAGGTGGCATGAGCATTTGCAATGTTGGTGCTTGAATTTTCATGGTCGCGTGACAGTGGCCTCGGTGAAGAACTTTCAGCTGGTTGCTACAGTGGACCAAAGCCAACCAGGAGGGAAAGGAGACGAGGAAACAGTTCTCCTGCAGTTTGGTAAAGTAGGGGATGATACTTTTACCATGGATTATAGACAACCCTTATCTGCTTTCCAGGCTTTTGCCATTTGCTTGACTAGCTTTGGCACTAAACTTGCTTGTGAGTAA 1137 0.5242 MSLRKVFRSRKFSRSFKEATAPVAAVGEGGGGCGGGGGMDAAHGNGWSNMLPEILGEIVRRVDAAEEQWPNRQSVVACACVCKRWRDITREIVREPSHAGKITFPSCLKQPGPRVVPHQCLIKRNKRTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLNCPVSSSSTGESSDSTSLDGHKMHDKEHAAAGHTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1220 378 Pfam F-box domain 47 93 IPR001810 GO:0005515
Ssu8g1220 378 PRINTS Tubby superfamily signature 162 178 IPR000007 -
Ssu8g1220 378 PRINTS Tubby superfamily signature 288 305 IPR000007 -
Ssu8g1220 378 PRINTS Tubby superfamily signature 178 202 IPR000007 -
Ssu8g1220 378 PRINTS Tubby superfamily signature 306 322 IPR000007 -
Ssu8g1220 378 PRINTS Tubby superfamily signature 335 354 IPR000007 -
Ssu8g1220 378 PRINTS Tubby superfamily signature 227 254 IPR000007 -
Ssu8g1220 378 PRINTS Tubby superfamily signature 356 378 IPR000007 -
Ssu8g1220 378 PANTHER TUBBY-RELATED 39 378 - -
Ssu8g1220 378 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 39 378 - -
Ssu8g1220 378 ProSitePatterns Tub family signature 2. 363 378 IPR018066 -
Ssu8g1220 378 SUPERFAMILY F-box domain 44 90 IPR036047 GO:0005515
Ssu8g1220 378 SUPERFAMILY Tubby C-terminal domain-like 96 378 IPR025659 -
Ssu8g1220 378 Gene3D Tubby Protein; Chain A 103 378 IPR025659 -
Ssu8g1220 378 ProSitePatterns Tub family signature 1. 306 319 IPR018066 -
Ssu8g1220 378 Pfam Tub family 108 373 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1220 Ssu-Chr8 21747382 21751757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1220 1 378 TUB Transcription Factor Family AT1G53320 71.835 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Ssu8g1220 Tub 1.3e-101 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1220 K19600 - gmx:100801919 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1220 8 21747382 21751757 Ssu8g1220 8 21747382 21751757 ECH