Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1203 ATGTCGCATTCCTCGTCGGGGAAGCCCGTTTCCGAGGTGGTCGGCATCGACGCCTTCGCCGATCGCTTCCGCGACACGCTCAGCTGCGACAACGGCGCCAACAAGCCCGACTTCCGCGAACTCGATCTGGGCTCGCCGGTGTCGCCGTTGCGGACCCGGGCCCCCGCCGCCAGCAGCAGTTCGAGCTCTTCTGGATCCTTCTCGGGCCGGACCGGGCCCGGACCGGTTCCCCGAAAGCCCGAATCGGCGCAGAACAACAACAGCTCCGGGGAGCTTTCGGGGTCCAGCGAGAACAGCCCCACCGCGCGGGGGCTCAAGCCGGGTCACGCGAGATCCGACTCGGGATCCGCGCCGGCGCCGTTGATATACTCCGGCCAGACGGCGACTTCGCCGGCCACGAATGTCCTCCCCACCGGGAACATCTGCCCCTCCGGGAAGATCTTGAAGACCGGTATGGCGGCGAATCGGAGTGGGAGGAGCGACGTTTTGGGGTCCGGCATGGGGAACTACGGCCACGGGAGCATAATGCGCGGCGGCGGGAAGGCTGAGCCGGCGAGCGTGCGGTGCGTCGGCGGCGGCGAGGCGGTGAAGAGAGGGGTGCACGTGCAGGGTGCGGATCCGGAGGAGTTGAAGAGGGCGGGGAATGAGTGTTACAAGAGGGGGCACTTTGCCGAGGCGTTGAGTCTCTACGATCGGGCAATTGCGCTGTCGCCGGCGAGCGCCGCTTACCGGAGCAACCGCGCGGCGGCGCTGACCGGGTTGGGGCGGTTGGGCGAGGCGGTGAGGGAATGTGAGGAGGCTGTGAGGTTGGATCGCAATTATGGAAGGGCGCATCAGCGTTTGGCTTCTCTTTTCCTAAGGTTAGGACAAGTTGAGAATGCTAGGAAGCACCTTTGTTATCCTGGGCTGCAGCCAGATCCGTGTGAGATGCAGAGGTTGCAAGTGGTGGAAAAGCATATAAGCAAATGTGGGGATGTACGGAGAGTAGGGGATTGGAGGAGTGTTCTGAGGGAGGTTGATGCTGCTGTTGCTGCTGGAGCGGATTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCATTTTTGAAGCTCCACCAGATTGATGATGCAGAATTGGTTTTATTGCATATTCCCAAATCGGAGCCGCACACTAGTTCCTCTTCTCAGGCTAGATTTTTTGGGATGCTTTCTGGGGCTTATTCCTATTTTGTCAGAGCTCAGATTGAGATGGCATTGGGAAGGTTCGAGAATGCGGTTACAGCTGCTGAGAAAGCCAGTCAGATTGATCCCCGGAATGTTGAAGTTGCTGTTTTGCTCAACAATGTAAGGATGGTGGCAAGGGCTCGAGTGCGCGGCAATGATCTTTTTAAATCTGAAAGGTTCACTGAAGCTTGCTCAGCATATGGGGATGGTTTGAGACTGGACCCTTCAAATTCTGTTCTATATTGCAATAGAGCAGCTTGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTCCAACCAAGCTTTACTTATCCAACCAAATTACACCAAGGCCCTTCTCCGAAGGGCTGCATCAAACAGCAAGCTAGAAAGGTGGGAAGAAGCAGTCAAAGATTATGAGGTCTTGCGGAGAGAACTTCCAAATGACAATGAAGTTGCTGAATCTCTTTTCCATGCACAAGTTGCCCTAAAGAAATCACGTGGGGAAgaagtatataatttaaaatttggtggTGAGGTGGAAGAAGTATCAGGTCTTGAGCAGTTTAGAGGTGCAATATCTTTACCAGGTGTATCCATTGTCTATTTTGAAGTTGCATCTAATTCGCAATGCAAGCAAATATCGCCATTTGTTGATACATTATGTGGTCGATATCCATCTATTAACTTTCTCAAGGTGGACATTCAAGAAAGCCCAACAATTGCAACCGCAGAGAATGTTAGGATTGTACCAACCTTCAAGATATACAAAAATGGCAGCCGAGTGAAGGAAATTGTATGCCCTAGTCGTGACATGTTGGAACACTCTCTGAGGCATTACAGCTTTTAG 2040 0.5324 MSHSSSGKPVSEVVGIDAFADRFRDTLSCDNGANKPDFRELDLGSPVSPLRTRAPAASSSSSSSGSFSGRTGPGPVPRKPESAQNNNSSGELSGSSENSPTARGLKPGHARSDSGSAPAPLIYSGQTATSPATNVLPTGNICPSGKILKTGMAANRSGRSDVLGSGMGNYGHGSIMRGGGKAEPASVRCVGGGEAVKRGVHVQGADPEELKRAGNECYKRGHFAEALSLYDRAIALSPASAAYRSNRAAALTGLGRLGEAVRECEEAVRLDRNYGRAHQRLASLFLRLGQVENARKHLCYPGLQPDPCEMQRLQVVEKHISKCGDVRRVGDWRSVLREVDAAVAAGADSSPQLFMCRAEAFLKLHQIDDAELVLLHIPKSEPHTSSSSQARFFGMLSGAYSYFVRAQIEMALGRFENAVTAAEKASQIDPRNVEVAVLLNNVRMVARARVRGNDLFKSERFTEACSAYGDGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALLIQPNYTKALLRRAASNSKLERWEEAVKDYEVLRRELPNDNEVAESLFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRGAISLPGVSIVYFEVASNSQCKQISPFVDTLCGRYPSINFLKVDIQESPTIATAENVRIVPTFKIYKNGSRVKEIVCPSRDMLEHSLRHYSF 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1203 679 Pfam Thioredoxin 595 670 IPR013766 -
Ssu8g1203 679 SUPERFAMILY Thioredoxin-like 482 677 IPR036249 -
Ssu8g1203 679 Pfam Tetratricopeptide repeat 400 432 IPR019734 GO:0005515
Ssu8g1203 679 SUPERFAMILY TPR-like 331 557 IPR011990 GO:0005515
Ssu8g1203 679 ProSiteProfiles TPR repeat profile. 399 432 IPR019734 GO:0005515
Ssu8g1203 679 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 17 677 - -
Ssu8g1203 679 Gene3D Tetratricopeptide repeat domain 205 565 IPR011990 GO:0005515
Ssu8g1203 679 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 17 677 IPR044534 -
Ssu8g1203 679 ProSiteProfiles TPR repeat profile. 207 240 IPR019734 GO:0005515
Ssu8g1203 679 SMART tpr_5 399 432 IPR019734 GO:0005515
Ssu8g1203 679 SMART tpr_5 479 512 IPR019734 GO:0005515
Ssu8g1203 679 SMART tpr_5 513 546 IPR019734 GO:0005515
Ssu8g1203 679 SMART tpr_5 445 478 IPR019734 GO:0005515
Ssu8g1203 679 SMART tpr_5 241 274 IPR019734 GO:0005515
Ssu8g1203 679 SMART tpr_5 207 240 IPR019734 GO:0005515
Ssu8g1203 679 SUPERFAMILY TPR-like 208 308 IPR011990 GO:0005515
Ssu8g1203 679 MobiDBLite consensus disorder prediction 80 102 - -
Ssu8g1203 679 Pfam TPR repeat 214 255 - -
Ssu8g1203 679 CDD TRX_family 584 674 - -
Ssu8g1203 679 Gene3D Glutaredoxin 572 678 - -
Ssu8g1203 679 MobiDBLite consensus disorder prediction 52 70 - -
Ssu8g1203 679 MobiDBLite consensus disorder prediction 119 136 - -
Ssu8g1203 679 MobiDBLite consensus disorder prediction 26 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1203 Ssu-Chr8 21518514 21521513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1203 444 589 U-box Gene Family AT3G07370 27.869 1.45e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1203 - - gmx:100795358 1135.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1203 8 21518514 21521513 Ssu8g1203 8 21518514 21521513 ECH