Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1201 ATGGAGTCTGGTGAGCCCTTTACACTGTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAGCCAGGAAAAGGCAGAATCAAGCCGTGTATGCtgatgataatgataaaaatgatgATTCATGCGGGTTGTGTGGTGAGGGGGGTGAGCTGATATGTTGTGATAACTGTCCGTCTACTTTTCACCTAGCTTGTTTGTCCACTCAGGAGATCCCAGATGGTAACTGGTACTGCACAAACTGCACTTGTAGGATATGTGGAAATTTGGTCATTGATAAAGACACTTCAGATGCGCATGATTCATTACAATGTTCACAGTGTGAACATAAATATCATGAGAAATGCCTGAAAGATAGAGATAAACAAGAAGGAGCAGTTTCAGACACTTGGTTTTGTGGTCAGAGTTGTCAGGAGGTGTACTCTGGACTCCAATCTGAGGTGGGGTTAGTTAATCAAGTAGCTGAAGGCATCTCATGGACGCTTCTTAGATGCATCCATGATGACCAAAAGGTTCATTCTGCACAGTGGTTTGCCCTAAAGGCTGTATGCAATACGAAATTAGCTGTTGCTCTTACTATCATGGAGGAGTGTTTTGTGTCAATGTTTGATCCAAGAACAGGCATCCACATGATACCTCAAGTTTTATACAATTGGGGGTCTGAGTTTGCTCGTCTGAATTTTCAAGGGTTTTACACTGTGGTATTGGAGAAACAAGATGTGTTGATATCTGTAGCATCCATCAGGGTGCATGGAACTACAGTAGCAGAGATGCCTCTAATTGCCACTTGCAGTCAGTATCGTCGTCGGGGAATGTGCCGACTCCTTGTGAGTGCTATTGAACAGATGTTAATATCTGTCAAGGTAGAAAAGCTTGTGATATCAGCCATTCcagatttggttgagacatgGACTAAGGGCTTTGGATTCATACCTGTTGATGACATTGAAAGGCAAAGATTGAATGAAATTAACTTGATGGTTTTTCCTGGGACTGTGTTACTTGTGAAACCCTTACATGGGAAGGAGAAAATTGAAGCTGAAACAGAACTGTGTGATCAATCAGCTCTTGCAACAGATGAATCAATCAAAGTAGGTATCAGTTTTGGAGGAATGGCTATTACTGAATCATTGCCACAAGATGTTGGAAAGATAACTATCAACAAAGTTGAAGCAAAGTCAGAACATGAACCTGTGTATGGCAAAAATCAATCAGACTATAAAGCTGGTAGTGAAACTTGCAGTGATGATGATACACAAGCTGCTGACACTGCATTAGAAGCCAAAGAATCAACAGAAATAAGTAGCTGTTTTAAAGAAGAGAAGATCAACCACTTGAGAGTGTCATGTGGCTCAGAGAAATCTATTGAAGAAAACAATGTGCAGGAATTGAGGACAAGCAACAAAGGGAACATGGTATGTGATTCAGTACAGCAATCTAGTGAGAGTTGTGCTAACAAAGATGGTGCTGAACCAGGTAAAATAATTGTTGAGGACAAGAATATCAAAATAGGTGAGGGTCAGGAAAATGCTTTGCAGGgccatttttcaaatttgtcctgcaaaacatttttaggcaGCAATTTTGACACGGATTCCAATATTGAATGCTCAGTTATGTATGATGAAACAGCTTTTTTTGGAACATTTGCAAAATCTGCAAGCTga 1662 0.3905 MESGEPFTLCLLQAWSAEYKARKRQNQAVYADDNDKNDDSCGLCGEGGELICCDNCPSTFHLACLSTQEIPDGNWYCTNCTCRICGNLVIDKDTSDAHDSLQCSQCEHKYHEKCLKDRDKQEGAVSDTWFCGQSCQEVYSGLQSEVGLVNQVAEGISWTLLRCIHDDQKVHSAQWFALKAVCNTKLAVALTIMEECFVSMFDPRTGIHMIPQVLYNWGSEFARLNFQGFYTVVLEKQDVLISVASIRVHGTTVAEMPLIATCSQYRRRGMCRLLVSAIEQMLISVKVEKLVISAIPDLVETWTKGFGFIPVDDIERQRLNEINLMVFPGTVLLVKPLHGKEKIEAETELCDQSALATDESIKVGISFGGMAITESLPQDVGKITINKVEAKSEHEPVYGKNQSDYKAGSETCSDDDTQAADTALEAKESTEISSCFKEEKINHLRVSCGSEKSIEENNVQELRTSNKGNMVCDSVQQSSESCANKDGAEPGKIIVEDKNIKIGEGQENALQGHFSNLSCKTFLGSNFDTDSNIECSVMYDETAFFGTFAKSAS 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1201 553 PANTHER PHD FINGER PROTEIN 12 1 551 IPR042163 GO:0003714|GO:0045892
Ssu8g1201 553 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 191 338 IPR000182 GO:0016407
Ssu8g1201 553 Pfam PHD-finger 41 82 IPR019787 -
Ssu8g1201 553 PANTHER INCREASED DNA METHYLATION 1 1 551 - -
Ssu8g1201 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 82 IPR013083 -
Ssu8g1201 553 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 187 314 IPR016181 -
Ssu8g1201 553 Gene3D - 184 323 - -
Ssu8g1201 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 139 IPR013083 -
Ssu8g1201 553 SUPERFAMILY FYVE/PHD zinc finger 24 82 IPR011011 -
Ssu8g1201 553 SMART PHD_3 82 136 IPR001965 -
Ssu8g1201 553 SMART PHD_3 40 81 IPR001965 -
Ssu8g1201 553 ProSiteProfiles Zinc finger PHD-type profile. 38 83 IPR019787 -
Ssu8g1201 553 MobiDBLite consensus disorder prediction 394 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1201 Ssu-Chr8 21463869 21470732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1201 1 350 PHD Transcription Factor Family AT3G14980 62.571 7.40e-159 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu8g1201 PHD 2.9e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1201 - - gmx:100795889 989.564
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1201 8 21463869 21470732 Ssu8g1201 8 21463869 21470732 ECH