Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1196 ATGATTAAAAATGGAGTGTGCAGTTTCCGCACGTGCCTCCGTTTCCCGGAGAGACCCCTATTCCGACCACCTCCGCGCTCACTCAGTTTCCAGCGGCGGTTTCTCGTGACTGCATCCGAATccaagaagaaagagaaggtgATAGTGATTTCTGGACCCACCGGTTCCGGGAAGAGCCGCCTCGCATTGGATCTCGCAAAGCGCCTCAACGGCGAAATCATCAGTGCCGACTCCGTTCAGGTGTATCGGGGTCTTGATGTTGGATCTGCAAAGCCTTCCCCAAATGATAGAAAGGAGGTACCACATCATCTGGTTGACATACTTCACCCATCTGAAGaCTATTCTGTTGGGCAGTTTTTTGAGGATGCAAGGCAAGCTACAAGATGTATTCTTGACAATGGCCGTGTTCCCATACTTGTTGGAGGCACTGGATTGTATTTAAGATGgTTCATATATGGAAAGCCAGATGTACCTAAAGCCTCTCCAGAGACTACATCTGAAGCATATCAAGAGTTAGCTGAACTACAGAGGAATGAAGACTGGGATACAGCTGTGCAGTTGGTGGTTAAAGCAGGTGATCCAAAGGCCCAATTTCTAACAGTGAATGATTGGTACCGATTACGGCGTAGCCTAGAGATTATTAAGTCTAGTGGATCACCTCCTTCTGCTTTTCGGATACCATATGATTCTTTCAGGGAACAGGGTGAATATAGTGTTGTTGATGGTTCTGAGTCGTCTGATATGAACACTTATGGTGATGCAATGGAAGAAACTAACTCATCAGAGTTAGACTATGAGTTTATGTGTTTTTTCCTTTCTAGCCAAAGACTTGACCTCTATAAATCAATTGATTATCGGTGTGAAGATATGCTATTAGGAAGGGATGGGATTTTGTCTGAGGCTCAATGGCTTCTTGATACGGGTCTTCATCCAAACTCCAATTCTGCTACAAAAGCAATTGGTTACAGACAaGCAATGGAGTACTTACTAAGATGCAGACAGCAAGGGGGTCAGAGTTCTGTCGGAGAATTTTACAAATTCTTGTCTGAATTTCAAAAAGCATCACGGAATTTTGCAAAAAGGCAGTTGACATGGTTTCGCAATGAAAATATATACCACTGGCTTGATGCTTCTAAACCTCTGGAAACCATTCTCAACTTCATCGATGGTGCATACCATGATTGGAATGGAAGTCTTCTTGTGCCTGAACACCTAAGAATGTCTAGAGATATTTCTAATCGCAGAGAAGCTACACAACTCAAGTCTTACCGCACCAAAAATagGCATTTTGTGAACGGGGAAGATTGTTCTCATATTCTGAACTGGATAAGCAAGAGTCAAAGGTGA 1347 0.4291 MIKNGVCSFRTCLRFPERPLFRPPPRSLSFQRRFLVTASESKKKEKVIVISGPTGSGKSRLALDLAKRLNGEIISADSVQVYRGLDVGSAKPSPNDRKEVPHHLVDILHPSEDYSVGQFFEDARQATRCILDNGRVPILVGGTGLYLRWFIYGKPDVPKASPETTSEAYQELAELQRNEDWDTAVQLVVKAGDPKAQFLTVNDWYRLRRSLEIIKSSGSPPSAFRIPYDSFREQGEYSVVDGSESSDMNTYGDAMEETNSSELDYEFMCFFLSSQRLDLYKSIDYRCEDMLLGRDGILSEAQWLLDTGLHPNSNSATKAIGYRQAMEYLLRCRQQGGQSSVGEFYKFLSEFQKASRNFAKRQLTWFRNENIYHWLDASKPLETILNFIDGAYHDWNGSLLVPEHLRMSRDISNRREATQLKSYRTKNRHFVNGEDCSHILNWISKSQR 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1196 448 Hamap tRNA dimethylallyltransferase [miaA]. 47 386 IPR018022 GO:0008033
Ssu8g1196 448 Pfam IPP transferase 80 369 - -
Ssu8g1196 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 357 IPR027417 -
Ssu8g1196 448 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 9 37 445 - -
Ssu8g1196 448 Gene3D - 44 437 IPR027417 -
Ssu8g1196 448 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 37 445 IPR039657 -
Ssu8g1196 448 Gene3D - 156 226 - -
Ssu8g1196 448 TIGRFAM miaA: tRNA dimethylallyltransferase 47 224 IPR018022 GO:0008033
Ssu8g1196 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 180 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1196 Ssu-Chr8 21402147 21411806 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1196 50 360 C2H2 Transcription Factor Family AT2G27760 27.586 1.42e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1196 K00791 - gmx:100808814 820.076