Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1195 ATGCCTCTTCCCTATAGTCCACACTCGGCGCCCCCCCACCCTTGCGAAAACCCCGCAAGTCATCGAGTTTGGTTTGGGGAAGCGGGTATTAACCAGCCGTACTCCCGTTCTCCCCTTTGGCATGGAACTGCGAAAATTGAATGGCTGGCATCACTAAGCAAAAGCACCCTGGAAGAGGAAAACGAAAGCGACAAAAAGCGTCTGAGTCTGGATCCTCAAAGGAAGCATCATCAACTCCACCACCGTCAAGAAGAGCAGCAACGTGGTTATTTGCAACCGCAGAGGAAACGGGCTTTCTCGGGTTCGGTGGAGCATGCAGGAACGACGTCGTCGAGGCAGGGGATGGTGAGAGGAGGGGGAGGGGGAGGGGAGATCGTGGAGGTTGAAGGGGGTCACATTGTGCGGTCCACGGGACGGAAGGACCGACACAGCAAGGTTTGCACCGCCAAAGGACCGAGGGACCGACGGGTCAGGCTTTCGGCCCACACCGCGATCCAATTCTACGACGTGCAGGACCGCCTGGGCTACGACCGGCCCAGTAAGGCCGTGGACTGGCTCATCAACAAGGCCAAGTCCGCCATCGACCAACTCGCGCACCTCCCTCCCTGGAAACCCACGCTCCCAACCAACCAACCGCAAAACGACGACGAATCAGACAAACAGAACCCTAACCCCAACCCCAACCCCAACCCCGACCCCGACCCCGACCCCGACCCTAACCACGACGGTACAATTCTCAACCAGTTCAACGAGAACCTCGAGCACGATGGTGGTGGAGGTTCGAGTTTTCTTCCGTTGGATAACGATGCTATTAGGTCGTTCTTCCCCACAACGACGTCGTCGTTGATTCAGTACCATAGCTACCCGCCGGATTTGCTTTCGAGGACGAGCAGCCAGGACCTGCGGCTCTCGCTTCAGTCCTTGCAGGACCCGATTCTGCTGCACCAGAACAACAACGAGCACGTGCTTTTCGCCGGAACCGGGTTTGATAACATGGTGGCGTGGAATAACGCTTCTAACGAtactggtgctggtgctggtggaGGAGGAGGGTTTGTGTTTCACGCTCCTTCGCCTTTGCCGGGGCCGGTGACGGCGGCGTCGCCGGCGGTGGTGTTTGGCCAGGGCCAGTATCTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCTTCCGTTCGTGCGTGGATTGACGCGCCGTCGTTCGTCGCCGCCGATTATCATCATCGGCATCACTATCTGTCgccggcggcggcggcggcggcgttGGTGTATCAGTCCTCTCCGTCTTCGGCATTTGCGCCCGGGGGCTTCTCGGGTTTCCGCGTGCCGGCACGAATTCAGGGTGAGGAGGAGCACGACGGCGTGTCCGATAAGCCGTCCTCTGCTTCCTCCGATTCTCGCCGTTGA 1410 0.5667 MPLPYSPHSAPPHPCENPASHRVWFGEAGINQPYSRSPLWHGTAKIEWLASLSKSTLEEENESDKKRLSLDPQRKHHQLHHRQEEQQRGYLQPQRKRAFSGSVEHAGTTSSRQGMVRGGGGGGEIVEVEGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKSAIDQLAHLPPWKPTLPTNQPQNDDESDKQNPNPNPNPNPDPDPDPDPNHDGTILNQFNENLEHDGGGGSSFLPLDNDAIRSFFPTTTSSLIQYHSYPPDLLSRTSSQDLRLSLQSLQDPILLHQNNNEHVLFAGTGFDNMVAWNNASNDTGAGAGGGGGFVFHAPSPLPGPVTAASPAVVFGQGQYLSQRGPLQSSNTPSVRAWIDAPSFVAADYHHRHHYLSPAAAAAALVYQSSPSSAFAPGGFSGFRVPARIQGEEEHDGVSDKPSSASSDSRR 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1195 469 ProSiteProfiles TCP domain profile. 139 197 IPR017887 -
Ssu8g1195 469 MobiDBLite consensus disorder prediction 198 261 - -
Ssu8g1195 469 MobiDBLite consensus disorder prediction 59 91 - -
Ssu8g1195 469 Pfam TCP family transcription factor 138 220 IPR017887 -
Ssu8g1195 469 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 329 468 IPR005333 GO:0003700
Ssu8g1195 469 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 106 321 IPR005333 GO:0003700
Ssu8g1195 469 MobiDBLite consensus disorder prediction 446 469 - -
Ssu8g1195 469 PANTHER TRANSCRIPTION FACTOR TCP4 329 468 - -
Ssu8g1195 469 PANTHER TRANSCRIPTION FACTOR TCP4 106 321 - -
Ssu8g1195 469 MobiDBLite consensus disorder prediction 209 223 - -
Ssu8g1195 469 MobiDBLite consensus disorder prediction 444 469 - -
Ssu8g1195 469 MobiDBLite consensus disorder prediction 59 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1195 Ssu-Chr8 21324589 21325998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1195 113 468 TCP Transcription Factor Family AT1G53230 46.582 9.46e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu8g1195 TCP 2.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1195 - - gmx:100796938 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1195 8 21324589 21325998 Ssu3g1732 3 52830795 52831915 ECH
Ssu8g0956 8 16235130 16236155 Ssu8g1195 8 21324589 21325998 ECH
Ssu8g1195 8 21324589 21325998 Ssu8g1195 8 21324589 21325998 ECH