Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1189 ATGGCAAAAACGAGGCCAGGCAGAAAAGACTTGGATTCTTACACCATCAGAGGCACCAACAAGATCGTAAGAGCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACCAGCAAGCCGCCATACGTGGCGCGCGTGGAGAAGATCGAGCAGGATAGTAGGAACAATGTGAAGGTGCGTGTGAGGTGGTACTATAGACCCGAAGAGTCTATTGGAGGACGCAGGCAGTTCCATGGAGCGAAGGAGCTGTTTTTGTCTGACCATTATGACGTTCAGAGTGCTCACACCATTGAAGGGAAGTGTGTTGTGCACTCTTTTAAGAACTATACCAAGCTTGAGAATGTAGGTGCTGAGGATTACTATTGTAGATTTGAGTACAAGGCTGCCACTGGGGCTTTCACGCCTGACCGTGTTGCTGTGTATTGCAAGTGCGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGGTATCATCCAGCATGTGTGGGCATGACTATTGAAGAAGCAAAAAAATTGgatcattttgtttgttcagaatGTTCATCTGATGATGACATGAAGAAACCCCAGGCTACATTTCCTGTATCACCAGGATCTGATGTCAAGGTGAGACTACCTGCATCCAGTTCTCAACAATTTGAGTTGAGATGCAGTTTTACTTATGTCCCCTTTCAGTTTCCCTGCTCATGCAGGAGAGACATTATTATTCCTAGGTTAAAGGGAATGAGGACATATTAG 756 0.463 MAKTRPGRKDLDSYTIRGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDSRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPQATFPVSPGSDVKVRLPASSSQQFELRCSFTYVPFQFPCSCRRDIIIPRLKGMRTY 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1189 251 PANTHER OS08G0421900 PROTEIN 3 224 - -
Ssu8g1189 251 SMART PHD_3 140 187 IPR001965 -
Ssu8g1189 251 Pfam PHD-finger 140 188 IPR019787 -
Ssu8g1189 251 PANTHER BNAC03G64850D PROTEIN 3 224 IPR045205 GO:0006325|GO:0035064
Ssu8g1189 251 CDD BAH_BAHCC1 22 156 - -
Ssu8g1189 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 199 IPR013083 -
Ssu8g1189 251 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Ssu8g1189 251 SUPERFAMILY FYVE/PHD zinc finger 132 190 IPR011011 -
Ssu8g1189 251 Gene3D - 2 132 IPR043151 -
Ssu8g1189 251 Pfam BAH domain 23 135 IPR001025 GO:0003682
Ssu8g1189 251 SMART BAH_4 21 136 IPR001025 GO:0003682
Ssu8g1189 251 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Ssu8g1189 251 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1189 Ssu-Chr8 21232348 21234093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1189 31 132 Core DNA Replication Machinery Family AT4G14700 29.126 4.14e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu8g1189 BAH 4.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1189 K25868 - gmx:100800993 441.425