Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1185 ATGGATCAGATGATGGATTCAGATATGGATCAACAGAGACAAGGCTATCTGCATCCTGAACCCTGTATCCTTATGAGAGGAACCACCAGCATCTCGCAGCCTAATAATATGCACTCAATGATGAGAGCTTCTGGGAACACAACTAATGTTGATTCTCACTTTTTGCCAGATGCTTATGACAATGCTAGGGTGTATGGGGTTACACAATACAACGGCATTCAACCTCCACATAATCTTGAAATGGGTGTACCAGCTGTAGCCAACTTATATTATTCTGGCATTAATCCTTCTTCTAGTACTGGTGTTTTCCCTCTTCCTCTAAATCACAGAGCCTCTGATCAGTTGCCAGGTTCAAGCACATTTGCAGTTGCTGGAGTGTCTTCAGATAATTTTGGGAGAAGTTCTGGTTTCATGGATGATGTTAGAGGTCCATACAAAAGGAAAATTGCTGAAGGGATCAGAGGAAGTTACCAGTATTTTAATGCTTCAGCTAGTTCTTCAATTGCTCCCCCTAATGCAAGACATGCTGATGGGGTTGCTATGATGGATACTGCATCATTTTCATTCCGCGTGCCTTCACTTGTGGAAGTAGGACCTCATGGTAGTGCATGGAGCCGGGCAGGTGAGTCTATTATGGTGCATGACCATAATCATTTGATCCATGGAAACTATTTAGGGCAGCACTTTCAGCCAGCTGCTCCTCCCTGGTTGGACCAGCAGTtgagtagtaataataatgatggcCATCCTACACCCTGGAATCAGTCTCTTCCAATGCCTTATGTACAAgCACCCAATGTAAATGCAACTTCATTAGAGAGTGCAAGTATGGGAATGCAGAGATATCATGATCCAGCTGGAAACCGAAATGGCATCAGGTTTCCTCATCCTCTTCCTGTCAACCAACAGCACCATAATTATCATCATCCACCACTGCTTATGCAAGGAGTAAGAGGGCACAATATCAACTTTCACCCTGCGGTAACTGCAGCGTCATTTAGAGTTCCGACAAATCCTTCACGCAGTGTTGTGATCCCGACGCAGACTGGTTTTGAGATGGGTCCTAGGCATGTAGGCCCTGCACCATCTGCTGGCCTCCGGATTTACCGACCTCATAGAGGGGTCGTGCCTGAGACAACTCTTGGACATCGAAGTCTTCCCCCTGTGGGCTTCCTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTGGGAAATTTGGTTGACCATCACAGAGATATGCGCTTGGACATAGAGGATATGTCTTATGAGGATCTCCTTGCATTGGGTGAGCGGATTGGCAATGTAGGCACTGGTTTATCAGAGGAAACAATTAGAGCTCAATTGAagacaaaaacttatttatcgCGTGCTACTGCTATTAATCTGGAGGAGGCAGCTTGTGATGATGATCAGGAAACAGATTCTTGTATAATATGTCAGGAAGAATTTAAGAACCAAGAGAAGATTGGAGTTCTTCGATGTGAGCATGAATATCATGCAGATTGCTTAAGGAAATGGTTGGTCGTCAAAAATGTCTGCCCCATTTGCAAATCAGAAGCTTTGACTCCTGGAAGGAGGGATGTATAG 1587 0.4354 MDQMMDSDMDQQRQGYLHPEPCILMRGTTSISQPNNMHSMMRASGNTTNVDSHFLPDAYDNARVYGVTQYNGIQPPHNLEMGVPAVANLYYSGINPSSSTGVFPLPLNHRASDQLPGSSTFAVAGVSSDNFGRSSGFMDDVRGPYKRKIAEGIRGSYQYFNASASSSIAPPNARHADGVAMMDTASFSFRVPSLVEVGPHGSAWSRAGESIMVHDHNHLIHGNYLGQHFQPAAPPWLDQQLSSNNNDGHPTPWNQSLPMPYVQAPNVNATSLESASMGMQRYHDPAGNRNGIRFPHPLPVNQQHHNYHHPPLLMQGVRGHNINFHPAVTAASFRVPTNPSRSVVIPTQTGFEMGPRHVGPAPSAGLRIYRPHRGVVPETTLGHRSLPPVGFLQVDDVALIDEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGNVGTGLSEETIRAQLKTKTYLSRATAINLEEAACDDDQETDSCIICQEEFKNQEKIGVLRCEHEYHADCLRKWLVVKNVCPICKSEALTPGRRDV 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1185 528 Pfam Ring finger domain 474 517 IPR001841 -
Ssu8g1185 528 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 130 525 - -
Ssu8g1185 528 SMART ring_2 476 516 IPR001841 -
Ssu8g1185 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 438 521 IPR013083 -
Ssu8g1185 528 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 130 525 IPR045191 GO:0061630
Ssu8g1185 528 ProSiteProfiles Zinc finger RING-type profile. 476 517 IPR001841 -
Ssu8g1185 528 SUPERFAMILY RING/U-box 470 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1185 Ssu-Chr8 21115656 21118001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1185 392 521 C3H Transcription Factor Family AT2G15530 44.444 6.15e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1185 K19041 - gmx:100800642 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1185 8 21115656 21118001 Ssu8g1185 8 21115656 21118001 ECH