Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1184 ATGAAGAAACCGAAGCAAACTCAGTTGAACCCCAATTGGGTTCAACTCCAACAAAAGCTGAAGCTGAATGGCTCCAAGGCTTCAAGGACCTTTAAAAATTCAGATGACGACACCCCAGAATCAGTATTGggGAAACGTAAAGAGAGACCAGATGATGAATCCAATGATTGTCAGATTAATGCTCTTATTCCTGTAAATGACGATTCAAGTCTGACAGATACGGTGGCCATGGATTGTGAAATGGTCGGCGTTGGTCAAGGAAACAAGAGTGCCCTTGGAAGAGTGACTCTGGTCAATAAGTGGGGAAATGTTATTTATGACGAGTTTGTCCGGCCAATTGAACGGGTTGTTGACTTCCGCACTAAAATTAGTGGCATAAGACCTCGAGATCTTAGAAAAGCAATGGATTTTTGGACTGCTCAGAAGAAAGTGGCAGAGTTGATGAATGGAAGGATCCTTGTTGGTCATGCCTTGTCCAATGACCTTAAGGCATTATTATTAAGTCATCCCAAAAAGGATACACGGGATACCTCTGAGTATCAACCATTTCTAAAGTCAAGTAGCAGAAGAGCACTGCGGCATCTTGCTGCAGAACATCTTGGTGTTAAGATCCAAACAGGAGAGCACTGCCCTATAGAAGATGCCCGTGCTGCTATGCTGCTTtaccaaagaaataaaaaagaatgggaGAAGAGCATGAAAGATCAATTTCGGTTCAAACAGAAACGGAGGAAATCAAAGCAGAAAAAGAAGCAGAAGAATGAAGATGCTTCAAATGCCAACCACGTTGGAATTGGATCATAG 804 0.4142 MKKPKQTQLNPNWVQLQQKLKLNGSKASRTFKNSDDDTPESVLGKRKERPDDESNDCQINALIPVNDDSSLTDTVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTKISGIRPRDLRKAMDFWTAQKKVAELMNGRILVGHALSNDLKALLLSHPKKDTRDTSEYQPFLKSSSRRALRHLAAEHLGVKIQTGEHCPIEDARAAMLLYQRNKKEWEKSMKDQFRFKQKRRKSKQKKKQKNEDASNANHVGIGS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1184 267 MobiDBLite consensus disorder prediction 24 55 - -
Ssu8g1184 267 Gene3D - 70 251 IPR036397 GO:0003676
Ssu8g1184 267 SMART exoiiiendus 73 231 IPR013520 -
Ssu8g1184 267 Coils Coil 212 232 - -
Ssu8g1184 267 PANTHER INTERFERON STIMULATED EXONUCLEASE GENE 20-RELATED 36 256 IPR034920 -
Ssu8g1184 267 SUPERFAMILY Ribonuclease H-like 74 231 IPR012337 -
Ssu8g1184 267 Pfam Exonuclease 75 222 IPR013520 -
Ssu8g1184 267 CDD REX4_like 75 223 IPR037431 GO:0006364|GO:0008408
Ssu8g1184 267 MobiDBLite consensus disorder prediction 233 267 - -
Ssu8g1184 267 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 36 256 - -
Ssu8g1184 267 MobiDBLite consensus disorder prediction 30 55 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1184 74 228 C2H2 Transcription Factor Family AT5G40310 38.596 2.63e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1184 K18327 - gmx:100819122 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1184 8 21091931 21095640 Ssu8g1184 8 21091931 21095640 ECH