Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1179 ATGCGATCATCGCCGTCTTCATTGGGTTCGCCGTCTCGATCGGCTTCGCGGCTTCGCAAGAAGCACAAGAGATTGGATGCAATATGTGAGGAAGAGTACACTCGAAACCATGGTGAGTTGAATGAGGATAACAATGCTTTGAACCCTGATGGCGGGGTTCGTCGAAGCTCCCGGGTTCGGCGTGCCCCGGTGCTGCTCGACGCTTCTCCCCCTCCGCCGAAGAAACGGCGGAGGGTGGATAAGGGTGGAATTGGTCGTGGTGTGGAGGGTGTGAAGAGTTTAGAGGGGGAAAATAGAGGTTCCGGTGGGGCTTGGAGTTCTAGGTTGAGATCAAGGGTTGGCAATGTAAGTTTTAGGGTGAAGGAGGAGAGGGAATTGCCGCGTGGGAAGAGGAAGCTATTTGAGGGTGTGGTGGGAAGGAGGGATGACGAGGAGGTTGGTAGGAAGGAGGAGTTGGAAGGATTGATGCCTAAGGTGGTTACGTCGAAGAGACCGGGGAGGATTAAGGCCACAAAGCATGAGGAAGGGCATGAAGAGGATGTGTCTCATGGGAGTTTGGAGGAGAGTAAGAGTCAGGAAGTGGAGCTTGTGTTGGACAGTGGTGAGGAGAGTGATTCTGCTCCCGAAACCGAATTGTCGGGAGGCAATCGGATGGATGATTCGGATGGCAGTGATGCCCCTCCTGTGATAGGGAATGAGGAGGGAGATCGGATGGATGATTTGGATGGAAAGGTCCCTCCTTTGGTCGGGAATGAGGAGAGGGACTTATCCAACGATTTGCAAACAGAGGAGTGTGGTGGTGACATTGAATTGTTGTCTCCGGTGGAACGGGTAGATAAAGTGGATGATCAGTTAGAGAGTGTGAAGGAGAGCAAGAGTGTAGGTGATGTTGCTGAACATGTAGATAATGAAGGATCCGTTGGTAAGGAGGTTGACGGCGACGAAACTGTCTTGAAAGATGCTAATGTTGGTAAGGAGgttgatgatgatgaaaatgtCTTGAAAGATGCTAATGTTGAGAGGACGGACGAGTTGAAACATGCTTCAAAAGACAAGCGTGGCCACCAACGTATCAAAGAGGGCAGGCGGTGTGGTTTGTGTGGCGGAGGGAGTGATGGTAAGCCTCCGAAAAGGTTAGCACAGGATAATGGTGAAAGTGAGAATGAAGCTTATAGTGGGTCGTCATCTTCAGAGGAGACTAATTATGATATCTGGGATGGTTTTGACAATGAACCTGGTTGGCTTGGGCGTCACTTGGGTCCTATTAATGATCACTATGGTATTGCTAGAATATGGGTTCATCTGCACTGTGCTGTATGGAGTCCAGAGGTTTATTTTGCTGACTTTGGATGCTTAAAAAATGTGAGGGCTGCACTTTTCCGAGGAAGAGCATTGAAGTGCACACGCTGTGGGAGGCGAGGGGCAACCACTGGTTGTCGCGTCGATCGCTGTCCAAGAACTTATCACTTGCCTTGTGCGAGAGCAAGTGGTTGCATCTTTGATCATCGTAAATTTCTTATAGCCTGCACAGATCATCGGCATCTCTTCCAACCTCGTGGTAATAAATATTTGGCTCGGATAAAGAAGTTGAAGGCTAGGAAAATGATGTGGGAGATAAGGAAGCGATCAAATGAAGCTTGCAGAAAAGATATTGCAGATGAAGAGAGATGGTTGGAAAATTGTGGAGAGGATGAAGAATTTTTGAAACGTGAGAATAAGAGGCTTCATCGTGATTTATTGAGATTAGCCCCAGTGTACATTGGGGGTTCAGACTCTGCCAGTGAAAATTCATTTCAGGGATGGGAATCCGTTGCTGGGCTTAAAGATGTCATCCGTTGTATGAAAGAAGTTGTTATTTTACCTCTGCTATATCCTGAGCTCTTTGATAATTTAGGGCTTACACCTCCAAGAGGCGTTCTTTTGCATGGGCATCCTGGAACAGGGAAAACCTTAGTGGTCCGGGCATTGATAGGTGCATGTGCCCGTGGTGATAAGCGGATTGCATATTTTGCCCGTAAAGGTGCAGATTGCTTGGGGAAGTATGTTGGTGATGCTGAGCGTCAACTGAGACTGTTATTTCAGGTTGCGGAGAAATGTCAACCTTCTATAATATTCTTTGATGAAATAGATGGGCTGGCACCCCGCCGCACTAGGCAGCAAGATCAGACACATAGTTCTGTTGTGTCAACATTGCTTGCTCTTATGGATGGTTTGAAATCTAGGGGTTCAGTTGTGGTCATAGGTGCAACAAACCGTCCTGAAGCTGTTGACCCAGCGCTTAGGCGCCCTGGTAGATTTGATCGGGaaatttattttccattacCATCAATTGAGGACAGAGCTTCCATTCTCTCACTTCACACCCAGAAGTGGCCAAAACCAATTACTGGATCCTTGCTTGAGTGGATTGCAAGAAAAACACCTGGCTTTGCTGGTGCTGATCTCCAGGCTCTTTGTACCCAAGCAGCAATCAATGCATTGAAGAGGAATTTCCCTTTGCAAGAAGTCCTGTCATTAGCTGCTGAAGAAAAACATTCTGGTTGTAAGCACATTCCTCTTCCGTCCTTTGCAGTGGAGGAGAGGGATTGGTTAGAGGCTTTTTTTTCTTCCCCACCACCTTGCTCCCGGAGAGATGCTGGAAATGCTGCTAATGATGTAGTATGCTCCCCTCTTCCCATCCAACTTATTCCTTGTTTATTGCAGCCATTATGCACTCTTCTTGTATCTCTTTATCTTGATGAACGTCTATGGTTACCACTTCCCATATCTAAAGCTGTAACGGTGATAAAGGATGTCATGGTTTCTGCTCTAGACAAAAAGCAACAGCCTTTTGATCGTTGGTGGTTGCACATGGatgattttcttcaagaaacAAATACTGTTTACGAGTTAAAGAGAAAGCTTACTTGTTCTGGCATTTTATCTGCGGACGATAGCATTGCTGGTTCTTATGATACTGTGGATGATGCCAATGATAACAACTTGAAGTTAGAATCTGCCATAAGGAACCCTCTTGGCATGCGTAATGGTTTATTTGCATTGGCCAACAAATCAGGATTTCGGATATTAATTTCTGGAAATCCACGATCTGGCCAGAGACATCTTGCTTCTTGCCTTCTTCATTGCTTTATTGGGAATATTGAAATACAGAAGATTGATATGGCAACTATTTTACAAGAAGGGCATGGAGAGGTGGTGCAAGGGATTGCTCAAATATTAATGAAATGTGCTAGCAGGCAATCTTGCATAGTATTCTTGCCAAGAATTGATTTATGGGCTGTGGAGAAACGTTTCCAAATTGCTGAAAGGACTGATTTGTGTTTAACGTTGGGCAAGTCTTGTTTCACACCAAACCAAGTTATTGAGAAGGAAAATGAGATCAACACTGAGAAAAACTCAACGGAGATGACCAAAGGCCAAGCCAACACAAAGGCTTCATATGCCTGGATGTCATTTATTGAGCAGGTGGAATCCATTGGTGTATCCACATCCTTGATGATTCTGGCTACTTCAGAAGTTCCCTATACAGAACTTCCACACAAAGTAAGAGAATTCTTCAAGAGTTACCAAACTAAAGACAGCCAGTCAACTCCTTTGGAGCAGACAGTTCCTCGATTCTCTCTGCAGATTGATGGGAATTTCAATCATGACTTGGTGATCAATCTTTCTGCAGTAGAGCTATTGAGAAATGTAGTTGAGCAGCAGGTTCAATTGATTCATCAGAGATCTCATGTTCATATGTGTGCCCAAAAGGCCCACAGAACCTATGAATCAATTGAAGTTTGTAAAGATAAGGTATGTCAAAGTAAAGAAGATGGATCGGCCAATGATAAGAAGAGTGAAATCCAACTTGAATCATTTACAAAAGTTCCACCAACACCCAACAGCAAGTCACTGAAGGGAAAGTCAACCTTGTTGTTGGCAATATCCACACTTGGCTATCAAATTCTTTTATACCCACATTTTGCTGAACTTTGTTGGGTCACTTCAAAACTCGAAGAAGGTCCTTGTGCTGATGTAAGTGGACCTTGGAGGGGCTGGCCTTTCAATTCCTGTATAATTCGTCCTAGTAATTCACACGACCAGGGGCTAGTTTCTTGTAGTTCTGGTGGCATTAAAAGCAGAGAAGTATCTGGTTTAGTCAGAGGCTTGATTGCCATTGGTTTATCAGCTTACAGAGGTGTTTATAAATCAGTTAGGGAAGTTTCCCTTGATGTAAGGAAGGTTCTCGAGATCTTAATTGAGaaaatcaatacaaaaattCAAGCTGGGAAAGATAGATATCAATATTTTCGTATTTTGTCACAAGTGGCTTATTTAGAAGATATGGTCAACAACTGGGCTTACACGTTGCTAAGTCTGGAGCAGGATTCCCCTGAGCATAAAGCAAAGGTTATACCAGCAAGTGGTGGGTCATTAAACAGTCATCTCACAGGTGAAAACCACCAAACTGAAGGTGAGGACTGCCATTTGGTTGTTCCTGTAGATGGTCGTGATTTGGAGATATTGGAGGGAAGTCATAAGGGAATTCCTTCTGAAACAACTGGATGTCTTGCCTCTAAtgacaaaaatgataatttggaTATTCTTGATCGTGATGATGGAAATGCTAGTCCTGAAAGATCTCTACAGAACCATTCTTTTTCAGATAAGCATATCAACAACTCTGCTGCTGCAAACCAGCCACTTTATCCATCCACAAGTCAGGAGAATGGAACATTACTTGGACAATCTGAATCTGGAACTGCTGGAAATATTGAAGTGGTGGGTGGAGAACTAGGGGTTTCAAAAGACTTGAACAAATCCGTGTGCACTCACTCTGTGGTCCTTTCTGAAAATGGAGTTCACACTGCTTGCGAACCGGAGACACAGAATGTCGAGATTGGTAACTTGCGGACCGACACTGATCAGCCTCTTAGCCTGTCCTCGGTAGAGACTGGTACTAAAGTCAGTGATGCTAAATCTGATACACATGAGAATGCTACAGATAATAATGTTTCTTCAAGTAATGGCAGGGGCCCTGTTGAATCTGGGGTTATTTGCTTGTATCAATGTTGCCCTACATGTCTCCAGAGTCTCCATCATTTGACAAAGAAAATACTTGTTGGAGAGTTGAGGTTGAACAGTGGCCAGTGGACAGTAGAAGATGTCCATGATGCTGTTGCATCATTATCTGTGGATCTTATTTCAGCAGTTCGAAAATGCTTTATGGCTGAAGATTTCATTGATTCATCAAATAAAACCTCAAGACATGAAAAGAATGGAGCATCTCTTGACTGTTTGAACCTGAAGACGTGTGATCCTGGAAACCAAGGCAAGGATGTTGTGGCAGCTGAATGTGTTTCTCACTCTGCAAGCCAACATGCAACTGCAATGGAAGATACGGTACTGAATGAATCCCCCAAGCTTGatcttaaatttgttttcagaGATGGTGTACTAGTTCATATGGACCCAGACAAGGATGTCCCACTTCACTGTAAATTTGAGAATTTGTGCCTTTGTTCTCTTAAGAGACTTGATAGTAATGACAAAGCGCCTTTTTGA 5547 0.4368 MRSSPSSLGSPSRSASRLRKKHKRLDAICEEEYTRNHGELNEDNNALNPDGGVRRSSRVRRAPVLLDASPPPPKKRRRVDKGGIGRGVEGVKSLEGENRGSGGAWSSRLRSRVGNVSFRVKEERELPRGKRKLFEGVVGRRDDEEVGRKEELEGLMPKVVTSKRPGRIKATKHEEGHEEDVSHGSLEESKSQEVELVLDSGEESDSAPETELSGGNRMDDSDGSDAPPVIGNEEGDRMDDLDGKVPPLVGNEERDLSNDLQTEECGGDIELLSPVERVDKVDDQLESVKESKSVGDVAEHVDNEGSVGKEVDGDETVLKDANVGKEVDDDENVLKDANVERTDELKHASKDKRGHQRIKEGRRCGLCGGGSDGKPPKRLAQDNGESENEAYSGSSSSEETNYDIWDGFDNEPGWLGRHLGPINDHYGIARIWVHLHCAVWSPEVYFADFGCLKNVRAALFRGRALKCTRCGRRGATTGCRVDRCPRTYHLPCARASGCIFDHRKFLIACTDHRHLFQPRGNKYLARIKKLKARKMMWEIRKRSNEACRKDIADEERWLENCGEDEEFLKRENKRLHRDLLRLAPVYIGGSDSASENSFQGWESVAGLKDVIRCMKEVVILPLLYPELFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGACARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPRRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSIEDRASILSLHTQKWPKPITGSLLEWIARKTPGFAGADLQALCTQAAINALKRNFPLQEVLSLAAEEKHSGCKHIPLPSFAVEERDWLEAFFSSPPPCSRRDAGNAANDVVCSPLPIQLIPCLLQPLCTLLVSLYLDERLWLPLPISKAVTVIKDVMVSALDKKQQPFDRWWLHMDDFLQETNTVYELKRKLTCSGILSADDSIAGSYDTVDDANDNNLKLESAIRNPLGMRNGLFALANKSGFRILISGNPRSGQRHLASCLLHCFIGNIEIQKIDMATILQEGHGEVVQGIAQILMKCASRQSCIVFLPRIDLWAVEKRFQIAERTDLCLTLGKSCFTPNQVIEKENEINTEKNSTEMTKGQANTKASYAWMSFIEQVESIGVSTSLMILATSEVPYTELPHKVREFFKSYQTKDSQSTPLEQTVPRFSLQIDGNFNHDLVINLSAVELLRNVVEQQVQLIHQRSHVHMCAQKAHRTYESIEVCKDKVCQSKEDGSANDKKSEIQLESFTKVPPTPNSKSLKGKSTLLLAISTLGYQILLYPHFAELCWVTSKLEEGPCADVSGPWRGWPFNSCIIRPSNSHDQGLVSCSSGGIKSREVSGLVRGLIAIGLSAYRGVYKSVREVSLDVRKVLEILIEKINTKIQAGKDRYQYFRILSQVAYLEDMVNNWAYTLLSLEQDSPEHKAKVIPASGGSLNSHLTGENHQTEGEDCHLVVPVDGRDLEILEGSHKGIPSETTGCLASNDKNDNLDILDRDDGNASPERSLQNHSFSDKHINNSAAANQPLYPSTSQENGTLLGQSESGTAGNIEVVGGELGVSKDLNKSVCTHSVVLSENGVHTACEPETQNVEIGNLRTDTDQPLSLSSVETGTKVSDAKSDTHENATDNNVSSSNGRGPVESGVICLYQCCPTCLQSLHHLTKKILVGELRLNSGQWTVEDVHDAVASLSVDLISAVRKCFMAEDFIDSSNKTSRHEKNGASLDCLNLKTCDPGNQGKDVVAAECVSHSASQHATAMEDTVLNESPKLDLKFVFRDGVLVHMDPDKDVPLHCKFENLCLCSLKRLDSNDKAPF 1848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1179 1848 MobiDBLite consensus disorder prediction 167 197 - -
Ssu8g1179 1848 PANTHER AAA DOMAIN-CONTAINING 50 1839 IPR045199 -
Ssu8g1179 1848 CDD AAA 633 774 - -
Ssu8g1179 1848 Pfam PHD-like zinc-binding domain 434 513 - -
Ssu8g1179 1848 MobiDBLite consensus disorder prediction 337 362 - -
Ssu8g1179 1848 MobiDBLite consensus disorder prediction 1270 1284 - -
Ssu8g1179 1848 MobiDBLite consensus disorder prediction 23 39 - -
Ssu8g1179 1848 MobiDBLite consensus disorder prediction 232 249 - -
Ssu8g1179 1848 MobiDBLite consensus disorder prediction 1270 1299 - -
Ssu8g1179 1848 Pfam AAA+ lid domain 800 832 IPR041569 -
Ssu8g1179 1848 Pfam ATPase family associated with various cellular activities (AAA) 639 774 IPR003959 GO:0005524|GO:0016887
Ssu8g1179 1848 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 515 IPR013083 -
Ssu8g1179 1848 MobiDBLite consensus disorder prediction 137 157 - -
Ssu8g1179 1848 MobiDBLite consensus disorder prediction 71 85 - -
Ssu8g1179 1848 MobiDBLite consensus disorder prediction 1464 1487 - -
Ssu8g1179 1848 MobiDBLite consensus disorder prediction 137 266 - -
Ssu8g1179 1848 Gene3D - 600 774 IPR027417 -
Ssu8g1179 1848 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 50 1839 - -
Ssu8g1179 1848 MobiDBLite consensus disorder prediction 1632 1650 - -
Ssu8g1179 1848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 831 IPR027417 -
Ssu8g1179 1848 MobiDBLite consensus disorder prediction 1540 1579 - -
Ssu8g1179 1848 MobiDBLite consensus disorder prediction 337 399 - -
Ssu8g1179 1848 MobiDBLite consensus disorder prediction 1528 1579 - -
Ssu8g1179 1848 ProSiteProfiles Extended PHD (ePHD) domain profile. 392 513 IPR034732 -
Ssu8g1179 1848 ProSitePatterns AAA-protein family signature. 744 762 IPR003960 GO:0005524|GO:0016887
Ssu8g1179 1848 MobiDBLite consensus disorder prediction 385 399 - -
Ssu8g1179 1848 Gene3D - 775 840 - -
Ssu8g1179 1848 MobiDBLite consensus disorder prediction 1632 1672 - -
Ssu8g1179 1848 MobiDBLite consensus disorder prediction 1 108 - -
Ssu8g1179 1848 MobiDBLite consensus disorder prediction 288 314 - -
Ssu8g1179 1848 SMART AAA_5 635 776 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1179 Ssu-Chr8 21046437 21053636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1179 601 836 Calmodulin-binding Proteins AT3G56690 40.756 1.58e-44 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1179 - - gmx:100803849 3121.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1179 8 21046437 21053636 Ssu8g1179 8 21046437 21053636 ECH