Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1170 ATGGACAACTCCTACCACCACTTGGACAACACTGAAGCTCACTTGCCACCTGGTTTTCGGTTCCACCCCACAGATGAGGAGCTTATAACTTACTACCTTCTCAAGAAGGTTCTAGACAGCACCTTCACTGGGAGAGCCATAGCTGAAGTTGACCTTAACAAAAGTGAACCATGGGAGCTACCTGCGAAAGCTAAGATGGGTGAGAAGGAGTGGTACTTCTTCAGCTTACGTGATAGGAAGTACCCAACTGGGTTACGAACCAATAGGGCTACTGAAGCTGGTTACTGGAAAGCCACAGGGAAAGATAGAGAGATTTATAGCTCCAAGACTTGCGCTTTGGTGGGGATGAAGAAAACCTTGGTTTTCTACCGAGGTAGAGCcccaaagggggagaaaagcAACTGGGTCATGCATGAGTATCGCCTTGAAGGCAAATTTGCTTACCATTACCTTTCTCGCAACTCCAAGGATGAGTGGGTCATATCACGTGTGTTCCAGAAGAGTAACACAAGCAATGGAGGCTCCACCATGTCTGCTACCAGCGGCTCCAAGAAGACAAGAATGAACAGCACCACCACCTCTCTCTGCCCTGAACCAAGTTCACCCTCCTCCGTTTATCTTCCACCTCTTCTAGACGCTTCTCCTTACGCCAACACCACCGCAACGTTCAACGACCGTCACAGCGGTTCCCATGATAGCACCACCAAAAAGGAGCACGTGTCCTGTTTCTCCACGACGATAGCTGCAGCCAGAGCTGCTAACTTCGCCAATGCAAGCTTTGACTTCCCTCCTTCTCAGACTCTCACTGCGGACCCCTTTACTCGGTTTCAGAGAAACGTTGGTGTCTCTGCCTTCCCAAGTTTGAGGTCACTGCAAGACAACCTTCAGTTgcctttctttttctccacGGCGGCGCATCCCTTCtccggcggcggcggcggctcCGGCGATTTTCTCGGCTGGCCAATGCCGGAGGAGCAAAGTGTTATTGAAGGTGGCCCTAACATGGCACTTGGGTCGTCGGAGCTTGATTGCATGTGGGGCTACTAG 1050 0.479 MDNSYHHLDNTEAHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKSEPWELPAKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSKDEWVISRVFQKSNTSNGGSTMSATSGSKKTRMNSTTTSLCPEPSSPSSVYLPPLLDASPYANTTATFNDRHSGSHDSTTKKEHVSCFSTTIAAARAANFANASFDFPPSQTLTADPFTRFQRNVGVSAFPSLRSLQDNLQLPFFFSTAAHPFSGGGGGSGDFLGWPMPEEQSVIEGGPNMALGSSELDCMWGY 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1170 349 MobiDBLite consensus disorder prediction 170 202 - -
Ssu8g1170 349 Gene3D NAC domain 24 172 IPR036093 GO:0003677|GO:0006355
Ssu8g1170 349 MobiDBLite consensus disorder prediction 170 201 - -
Ssu8g1170 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 5 344 - -
Ssu8g1170 349 SUPERFAMILY NAC domain 12 167 IPR036093 GO:0003677|GO:0006355
Ssu8g1170 349 ProSiteProfiles NAC domain profile. 15 167 IPR003441 GO:0003677|GO:0006355
Ssu8g1170 349 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Ssu8g1170 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1170 Ssu-Chr8 20937208 20939086 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1170 1 349 NAC Transcription Factor Family AT5G53950 53.806 5.20e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu8g1170 NAM 3.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1170 - - gmx:100805987 578.556