Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1168 ATGGCTGATGTGGCAGGTCTAGCTGAGGCAGCAGGATCAAGATTCAGTTCATTGGAGCTTATTGGGCAGGGATCATTTGGAGACGTCTATAAAGCGTTTGACAGGGAGCTCAACAAAGTAGTGGCCATTAAAGTAATTGATTTGGAAGAATCagaggatgaaattgagGATATCCAGAAGGAAATTTCTGTTCTGTCCCAATGTCGATGTCCATACATTACTGAGTATTATGGTTCCTATCTCAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGTGGCTCAGTTGCTGATCTACTCCAATCAGGTCCTCCCCTTGATGAAATGTCAATTGCTTGCATTCTACGTGACCTGCTTCATGCTATTGATTATCTACATAGTGAAGGAAAAATTCATAGAGACATTAAAGCTGCAAACATTTTATTGACTGAGAATGGTGATGTAAAGGTTGCAGATTTTGGTGTTTCTGCACAATTAACAAGGACTATATCAAGGAGAAAGACATTTGTAGGAACACCATTCTGGATGGCACCTGAGGTTATTCAGAATACAGATGGATATAATGAAAAgGCAGATATCTGGTCTCTGGGGATCACTGCAATTGAGATGGCAAAGGGGGAGCCTCCACTTGCTGATCTTCACCCGATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCTCCACAGCTAGATGACCATTTTTCTCGTCCATTGAAAGAATTTGTTTCATTGTGCTTAAAGAAGGTTCCTGCTGAGGCAAGTAGGCCAGGTGCTAAGGAACTTCTCAAAGACCGTTTTATTCGGAATGCTAGGAAGAGTACAAAACTTTCAGAAAGAATAAGAGAGCGTCCACAGTACCAAATAAAGGAAGATCAGGGGACACCTAGAAATGGCTCAAGAGGGATGGGGGAGGCATCAGATACTGTAAAGGTGTCAAGAGATTTAAGAGGTGAAGAAAATAATCGACCCAGTGATCAGGGTAAAACCCTGAAAAGTGCTGGATGGGACTTCAGCATTGATGGATCACAGGGTACTGGAACCTTTCGTAGTGTTGCTCGACCACCTCAGTTTAGAGATAAGAAAACTGAAGTTTCACATAATCAGCTTACCCAAAGAAAAGCTCCGGAGAGTGGCTATCAAGGGGGATCTGCCAATAGAAGTGCACGTAATGAGTCACTTGAAAGTTCCTTTGGAAGAGAGCTTAGAGTTCCCCACTATGATGAGCATCTGGATAATCACCTTGAAGATGATGAATTATCTGGGAATGGATCAGGAACTGTTGTTATTCGATCTCCAAAAGGATCAAGGTCATCCGTTTTTCATGACTGGAGCTCTCAGtCTAGCAGCAGCTATGCTTCTTTTGAAGATGCTTCTACAAGTGGAACTGTTGTTTTACGTAGCCAGCATGATGAGTCTGATTCTTCACTGACACCAAGGTCTCGATTGGGACTTCATGACAGAAATTCAAATGCCTCATTGGAAGATAGTGCAGCAAATCTTGCTGAGGCAAAGGCTGCTATCATGAGGAAAGCGAATGGTCGAGAGAGATTTGCCCGGGGAAAAATCAACAACAATAGACAGGAAAGCAAGAGAGATCAAAAGGCTAGCAGCTCTGATTTTTCAAGaccaCATGGTGAATATGATGCACACAAGGGCATGTTAAGATCACATCATGCTAGTGACAACGAAGAAAGTGCTaaaataatgtcatcttcaGTGCCATTATCTGTTTTACTTATTCCTTCATTAAAAGAGGCCATTGCTGATGATTCAGAAGAGTCAATCCTGTGGGcagttattaattcttttataaacaTGGAGGGCACAAAACCTAAATCCTGTGATGTTCTTGTCAAAAAGTTGCTTCAGCGATTGGCAAGTTCAAAGGAAGATTCATTGAAGGACCTGCAGGGACTAGCAGGCCAACTATTCAGCCAGACCAAGTCAGCTGAAGAAACCCGAAATGCAGAGGCTGATAACAGgaagaaacaacaaaacaaggaacATCATCCAAATAGCAATTTAAGCCCACTCGCTAGATTTCTTCTCTCAAGATGGCAAGGCCAAACCTCGCGGGATCTAAACCCATCTTGA 2100 0.411 MADVAGLAEAAGSRFSSLELIGQGSFGDVYKAFDRELNKVVAIKVIDLEESEDEIEDIQKEISVLSQCRCPYITEYYGSYLNQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNTDGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDDHFSRPLKEFVSLCLKKVPAEASRPGAKELLKDRFIRNARKSTKLSERIRERPQYQIKEDQGTPRNGSRGMGEASDTVKVSRDLRGEENNRPSDQGKTLKSAGWDFSIDGSQGTGTFRSVARPPQFRDKKTEVSHNQLTQRKAPESGYQGGSANRSARNESLESSFGRELRVPHYDEHLDNHLEDDELSGNGSGTVVIRSPKGSRSSVFHDWSSQSSSSYASFEDASTSGTVVLRSQHDESDSSLTPRSRLGLHDRNSNASLEDSAANLAEAKAAIMRKANGRERFARGKINNNRQESKRDQKASSSDFSRPHGEYDAHKGMLRSHHASDNEESAKIMSSSVPLSVLLIPSLKEAIADDSEESILWAVINSFINMEGTKPKSCDVLVKKLLQRLASSKEDSLKDLQGLAGQLFSQTKSAEETRNAEADNRKKQQNKEHHPNSNLSPLARFLLSRWQGQTSRDLNPS 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1168 699 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1168 699 MobiDBLite consensus disorder prediction 309 327 - -
Ssu8g1168 699 SUPERFAMILY Protein kinase-like (PK-like) 12 292 IPR011009 -
Ssu8g1168 699 MobiDBLite consensus disorder prediction 426 445 - -
Ssu8g1168 699 MobiDBLite consensus disorder prediction 415 445 - -
Ssu8g1168 699 Gene3D Transferase(Phosphotransferase) domain 1 12 301 - -
Ssu8g1168 699 MobiDBLite consensus disorder prediction 275 398 - -
Ssu8g1168 699 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Ssu8g1168 699 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 697 - -
Ssu8g1168 699 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 697 - -
Ssu8g1168 699 MobiDBLite consensus disorder prediction 646 678 - -
Ssu8g1168 699 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1168 699 MobiDBLite consensus disorder prediction 468 492 - -
Ssu8g1168 699 MobiDBLite consensus disorder prediction 338 352 - -
Ssu8g1168 699 MobiDBLite consensus disorder prediction 370 394 - -
Ssu8g1168 699 CDD STKc_MST3_like 13 289 - -
Ssu8g1168 699 Coils Coil 650 670 - -
Ssu8g1168 699 MobiDBLite consensus disorder prediction 513 555 - -
Ssu8g1168 699 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1168 699 MobiDBLite consensus disorder prediction 654 671 - -
Ssu8g1168 699 MobiDBLite consensus disorder prediction 275 291 - -
Ssu8g1168 699 Coils Coil 41 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1168 Ssu-Chr8 20898558 20910819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1168 1 696 MAP Kinase Kinase Kinase Kinase AT3G15220 64.530 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Ssu8g1168 Pkinase 5.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1168 K08838 - gmx:100815042 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1168 8 20898558 20910819 Ssu8g1168 8 20898558 20910819 ECH