Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1167 atgGTGGGCTCAGGAGCATCAGATAGGAGCAAAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGAGTCTGTCTCAACTCAGACTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCGAGAGTCCGAGGTGGTAATGGCTGCAAGGTTGGAGACGACAACGGCAGCTTGATGCTGATGTGGGAAGATGGGTTTTGCCGAGGGAGGGGTTCAGGTTGTCTGGAAGATATCGATGGAGAGGATCCTGTCAGAAAGGCCTTCAGCAAGATGTCCATTCAGTTGTATAATTATGGAGAAGGGTTGATGGGGAAAGTTGCATCTGATAAGTGCCACAAGTGGGTCTTTAAAGAGCCCACTGAATGTGAGCCGAATATCTCCAACTACTGGCAGAGCTCCTTTGATGCTCTTCCTCCTGAATGGACAGACCAGTTTGAGTCAGGCATTCAGACCATAGCTGTAATTCAAGCTGGACATGGCCTTCTCCAACTTGGTTCCTGTAAGATTATTCCTGAAGACCTCCATTTTGTGCTAAGAATGAGACACACTTTTGAATCCCTTGGCTACCAGTCTGGTTTCTACCTCTCCCAACTCTTCTCTTCTACAAGGAACACTTCCTCTTCTACTTCTGTTCCTTCAAAACTATCCACCATACCAATTAGGCCACCTCCTCCACTCTTCAACTGGGGTCAGAGGCCACTCACTTCTCCCACTTCCATGCTATCCTCACCCAATTTTCAACAACATGCAGCTAGGCTTGGGTTCCCAAGAGATGAGGCACACATGTTTCTCATGCCTCATGCATCATCTGAAAGTGCAAGAATTGAGGACATTATGGGGGAGCATGAAAACGACATAAAATGGCCCAATGGGTTGTCTTTCTTCAATGCTCTCACTGGAAGAACAGATGATGCTAAGCTTTTGTTCAATCCTGAGAGCTTGGGGAGCAAACAAGGCGATCAGAGTCAGCATCACCCTCTTAGTCAAAATCCCAATTCAGATGCCTCCAACATGCAAAATGCTAGTGGAGCCAACCCAAATGAGTTCTTGAGCTTGGATAGCCACCAAGGAGATGCAAGGAAAATGGACAAGTTCAAGAAGAGCTTCACTCTACCGGCAAGAGTggcttcatcatcttcatccaCTTCAATGGATCACCATCAACAAGGTGTGGAGTATAGGAATTCAGAAGGAGGTATGTACCCGGATGTCATGGAAACCTTTTTGGAGTGA 1242 0.4654 MVGSGASDRSKEAVGMMALHEALRRVCLNSDWTYSVFWTIRPRPRVRGGNGCKVGDDNGSLMLMWEDGFCRGRGSGCLEDIDGEDPVRKAFSKMSIQLYNYGEGLMGKVASDKCHKWVFKEPTECEPNISNYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFSSTRNTSSSTSVPSKLSTIPIRPPPPLFNWGQRPLTSPTSMLSSPNFQQHAARLGFPRDEAHMFLMPHASSESARIEDIMGEHENDIKWPNGLSFFNALTGRTDDAKLLFNPESLGSKQGDQSQHHPLSQNPNSDASNMQNASGANPNEFLSLDSHQGDARKMDKFKKSFTLPARVASSSSSTSMDHHQQGVEYRNSEGGMYPDVMETFLE 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1167 413 MobiDBLite consensus disorder prediction 317 355 - -
Ssu8g1167 413 MobiDBLite consensus disorder prediction 379 402 - -
Ssu8g1167 413 PANTHER GB|AAF34833.1 1 413 IPR044170 -
Ssu8g1167 413 MobiDBLite consensus disorder prediction 313 355 - -
Ssu8g1167 413 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 19 73 IPR025610 -
Ssu8g1167 413 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 87 187 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1167 Ssu-Chr8 20837620 20839920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1167 20 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 33.526 6.02e-21 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1167 - - gmx:100814723 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1167 8 20837620 20839920 Ssu8g1167 8 20837620 20839920 ECH