Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1166 ATGACTACCAGAGAAATCCTTCAAAAGATGAAGGTaaaagttgggttgggttcatcaGACCCTGATTCAGGAAAAGGAAAGAGCAAGATGTCAAAGAATGTAACTCATGGCTTTCACTTGGTAAAAGGAAAATCATATCATGACATGGAGGATTATGTTGTTGCTCGATTTAAGCAAGCAGATAACAATGAATTGGGTTTGTTTGCAATATTTGATGGCCACGCAGGTCACAATGTACCTAGTTACTTGCGGTCTCATTTGTTTGATAATATCTTAAAAGAGCCTGACTTCTGGAAAGAACCTGCAAATGCTGTCAAGAGAGCGTACAGTAAAACTGATTCTAGTATTTTAGAGATGTCGGGTGAATTGGGTAGAGGGGGTTCAACTGCAGTTACAGCAATATTAATCAATTGTCAGAAGTTAGTAGTAGCCAACATTGGGGATTCTCGGGCTGTCTTATGCAAGAAGGGTGTGGCCAAACAACTATCAGTGGATCATGAGCCAAACACAGAACATGAGGACATAAAAAATAGAGGTGGTTTTGTGTCAAACTTTCCAGGGGATGTTCCACGGGTTGATGGACGGTTAGCAGTGTCAAGGGCATTTGGTGACAAAAGCTTGAAGAAACACTTGAGTTCAGAGCCCTACGTGACAGTGGAGATTATAGATGATGATGCAGAGTTAGTTATATTAGCCAGTGATGGATTATGGAAGGTAATGTCAAATCAAGAAGCAGTTAATTGTATCAGAAATGTAAAGGATGCTCAGTCTTCAGCAAAGCGCCTTACTGAAGAAGCAGTTAACAGGAAAAGCACGGATGATATCTCCTGCATTGTTGTGAAGTTTCAGTGA 852 0.3955 MTTREILQKMKVKVGLGSSDPDSGKGKSKMSKNVTHGFHLVKGKSYHDMEDYVVARFKQADNNELGLFAIFDGHAGHNVPSYLRSHLFDNILKEPDFWKEPANAVKRAYSKTDSSILEMSGELGRGGSTAVTAILINCQKLVVANIGDSRAVLCKKGVAKQLSVDHEPNTEHEDIKNRGGFVSNFPGDVPRVDGRLAVSRAFGDKSLKKHLSSEPYVTVEIIDDDAELVILASDGLWKVMSNQEAVNCIRNVKDAQSSAKRLTEEAVNRKSTDDISCIVVKFQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1166 283 SUPERFAMILY PP2C-like 31 282 IPR036457 -
Ssu8g1166 283 CDD PP2Cc 36 282 IPR001932 -
Ssu8g1166 283 SMART PP2C_SIG_2 48 282 IPR001932 -
Ssu8g1166 283 SMART PP2C_4 25 280 IPR001932 -
Ssu8g1166 283 Pfam Protein phosphatase 2C 47 275 IPR001932 -
Ssu8g1166 283 PANTHER PROTEIN PHOSPHATASE 2C 1 283 IPR015655 GO:0004722|GO:0006470
Ssu8g1166 283 ProSiteProfiles PPM-type phosphatase domain profile. 35 282 IPR001932 -
Ssu8g1166 283 PANTHER PROTEIN PHOSPHATASE 2C 39-RELATED 1 283 - -
Ssu8g1166 283 ProSitePatterns PPM-type phosphatase domain signature. 67 75 IPR000222 GO:0043169
Ssu8g1166 283 Gene3D - 30 283 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1166 Ssu-Chr8 20822322 20824908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1166 1 283 PP2C-type Phosphatase Gene Family AT3G15260 74.394 8.44e-162 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1166 K17506 - gmx:100500617 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1166 8 20822322 20824908 Ssu8g1166 8 20822322 20824908 ECH