Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1165 ATGGAGATCAGGACTAGAGAGAGGAGGCAAGTGTCAATTGAGAAGGTGAGGAGAGACAGCACAGTTGAagtggaagatgaagaagaagaggaggatgAAAGTGTGGTTGGTGGTGAGGGTGGTCTTGCAGAAGATGAGAGGAAGAAAGGTGGTGGAGGGAGTGGGAGAAGAGGGTCAAGTGGGGGAGTAGTTTCTCCACCTTCATGTCAGGCAGAGATGTGTGGTGCTGATTTAACTGTTGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGCCTCATTCCAAGGCACCTTGTGTGATGGTTGCAGGACTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTGGCAGAGTTTGATGAAGCTAAAAGAAGCTGCCGGAGACGCTTGGCCAGACACAACGAGCGGCGCCGGAAAAGCAATGCTGAAACTTGCAACGAAGGATGCAGTGGGAGCAAAGGGCAGCACCCTACGGAAAGCCAATGCAGAAATGCTGATGACTGGGGAAGAATTCAGATGAACATGGCAAGGAATTCTGCTTACAAGTCCTTCCATATCAGATGA 573 0.4834 MEIRTRERRQVSIEKVRRDSTVEVEDEEEEEDESVVGGEGGLAEDERKKGGGGSGRRGSSGGVVSPPSCQAEMCGADLTVAKRYHRRHKVCEPHSKAPCVMVAGLRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKSNAETCNEGCSGSKGQHPTESQCRNADDWGRIQMNMARNSAYKSFHIR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1165 190 ProSiteProfiles Zinc finger SBP-type profile. 66 143 IPR004333 GO:0003677
Ssu8g1165 190 MobiDBLite consensus disorder prediction 23 39 - -
Ssu8g1165 190 SUPERFAMILY SBT domain 67 147 IPR036893 GO:0003677|GO:0005634
Ssu8g1165 190 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 190 IPR044817 GO:0003677
Ssu8g1165 190 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13 190 - -
Ssu8g1165 190 Coils Coil 119 139 - -
Ssu8g1165 190 MobiDBLite consensus disorder prediction 147 166 - -
Ssu8g1165 190 MobiDBLite consensus disorder prediction 1 68 - -
Ssu8g1165 190 Pfam SBP domain 69 142 IPR004333 GO:0003677
Ssu8g1165 190 MobiDBLite consensus disorder prediction 1 22 - -
Ssu8g1165 190 MobiDBLite consensus disorder prediction 145 166 - -
Ssu8g1165 190 Gene3D - 59 130 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1165 Ssu-Chr8 20820368 20821330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1165 57 190 SBP-box Gene Family AT3G15270 54.412 1.07e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu8g1165 SBP 4.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1165 - - gmx:100305703 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1165 8 20820368 20821330 Ssu1g0452 1 10450452 10452262 ECH
Ssu8g1165 8 20820368 20821330 Ssu8g1165 8 20820368 20821330 ECH