Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1163 ATGGTGCTGCTCAGATGTTTCCCAGTGACACTTTTGCAGTGGTGTTTCTTGGCTTGCTTACTTTGCTTGTCACTGGGGCTTAATAATCAAGCCCCATCCTGTGACCCGCATGATTTATCAGCCCTGAAGGAGTTTGCAGGCAACCTTACAAGTGGCTCTATCATCACAGCATGGTCCAATGACACTGTCTGCTGCAACTGGCTTGGAGTTGTTTGTGATAATGTGACTGGTGGTGGTGGAACAGTTGCTAGTAGAGTGACCAAGCTGATCCTGCCTGAAATGGGTCTCAATGGGACAATTTCACCCTCTTTGGCACAGCTAGATCAGCTCAATATGCTGAATCTTTCATTCAATCACCTCAAGGGTGGATTGCCTGTGGAGTTCTCCCGGTTAAAGCAGTTGAAGTTCCTTGATGTGAGCCATAACATGCTGTTTGGACCTGTTGCTGGGGCTCTATCTGGTTTGCAATCCATTGAAGTGTTGAATATTTCTAGCAATTTACTTTCTGGGGTTCTCTTTCCTTTTGAGGAATTCCCACATCTCCTTGCTCTCAACATGAGTAACAATTCATTCACTGGCAGATTCAATTCACAAATTTGCAGCTCTTCCAAGGATCTCCACACCCTTGATTTATCTGCAAACCATTTTGTTGGTGGTCTTGAAGGCTTGGACAACTGCACCACATCTCTCCAACAGTTGCATTTGGATTCCAATTTATTTTCTGGCCCTCTTCCAGATTCCTTGTATTCAATGTCAGCCTTGGAGAAACTCTCAGTCTGTGCCAACAATTTATCTGGCCAGTTAAGCAAGCAACTAAGTAAGCTCTCTAACCTAAAAGCTCTGGTGCTTTCGGGGAACAGGTTTTCTGGGGAAATTCCAAATGTGTTTGGGGACCTTTTGCAGCTAGAAGAATTAGTAGCACACGCCAATTCATTTTCTGGACCCTTGCCTTCCACCTTGGCTTTATGCCCTAAGCTTAGGGTGCTTGATCTTAAAAACAATTCCTTGTCAGGGCCTATTGATCTTAATTTTACTGGCTTGTCTAAACTTCAAACACTTGACCTTGCTAGTAATCATTTCATTGGACCCCTTCCAACTTCCCTGTCCTTTTGCCGTGAGTTGAAAATTCTAAGCCTTGCTAGGAATGGTTTAACTGGTTCTGTCCCTGAAAACTATGCCAACCTCACTTCACTTTTGTTTGTATCCTTGTCAAACAACAGCATTCAGAACTTCTCTGGGGCCATATCTGTTCTGCAGCAGTGCAAAAATCTCACCACTCTTATCCTCACTAAGAACTTCCATGGTGAGGAAATTTCAGCAAGTGTGACAGTAGGATTCgagagccttatgattttagCACTTGGAAATTGTGGTCTTAAAGGCCGTATTCCCTCTTGGTTGTCAAATTGCAGGAAGTTGGCAGTCCTTGACTTGTCTTGGAACCATTTGAATGGTAGTATTCCTTCTTGGATTGGTCAGATGGACAATTTGTTCTACTTGGAATTCTCGAATAATTCTCTCACAGGAGAAATACCAAAAAGTTTGACAGAGTTGAAGGGCCTCACGTGCCCGAACTGTAGTAGAGCAAGTCTTGCTGCATTTGCATTCATTCCTCTTTTTGTTAAGAGAAACACAAGTGCAAGTGGGTTGCAATATAACCAGGCCTCAAGTTTCCCTCCTTCAATTTACTTGAGCAATAATGTATTAAGTGGAAATATATGGCCTGAGATTGGTCGATTGAAAGCACTGCATGTCTTGGATTTAAGCAGGAACAACATCACTGGTACCATTCCTAGCACTATTTCAGAGATGGAGAACTTGGAATCATTAGATTTATCTTATAATGATCTCTCTGGAGAAATTCCTCAATCATTTAACAACCTCACATTCTTGTCAAAGTTCAGTGTGGCATATAACCGCTTAGATGGACCAATTCCAACTGGGGGGCAGTTTTTAAGCTTCCCTAGTTCAAGTTTTGAGGGCAACCTGGGGCTTTGTAGGGATATCGATTCTCCTTGCAAAATTGTCAACAATACAAGGCCCATCATTTCTTCCGGTTCTTCCAGAAAACTTGGTAGAGGCAATGTCCTTGGCATAACAATCAGTATAGGGATAGGGCTTGCGCTGCTTCTTGCAATTATTCTGCTAAAAATGTCAAAGAGGGATGAGGATAAGCCTATTGATAACTTCGATGAGGAACTGAATAGCAGGCCACACAGGTTATCTGAAGCACTTGTTTCCTCAAAGTTGGTGCTTTTCCAGAATTCAGATTGCAAGGATCTTACAGTTGCAGATTTGTTAAAATCCACAAACAATTTCAACCAGGCAAATATTATTGGTTGTGGTGGCTTTGGTCTTGTCTACAAGGCATATCTTCCGAATGGCACAAAAGCAGCCATCAAGAGACTTTCAGGGGACTGTGGCCAGATGGAACGTGAATTCCAAGCTGAAGTAGAGGCCCTCTCAAGAGCTCAACACAAGAACCTTGTTTCTCTGAAAGGATATTGTCGGCATGGCAGTGACAGATTGCTAATATACTCGTATTTGGAGAATGGAAGCTTGGATTATTGGCTACATGAGTGTGTGGATGAAAATTCAGCTCTTAAATGGGATGCAAGGCTCAAGATTGCACAAGGCGCTGCTCGTGGTTTAGCTTACTTGCATAAAGGGTGTGAACCATACATAGTGCATCGAGATGTTAAATCTAGCAACATCCTTTTGGATGATAAGTTTGAAGCTCATTTGGctgattttggtctctcaagGCTACTTCAACCCTATGACACTCATGTTACAACTGACTTGGTAGGAACTCTCGGATATATTCCTCCAGAATATAGTCAGACACTGACAGCAACCTTTAGGGGTGATGTCTATAGTTTCGGTGTTGTTCTTCTTGAGCTTCTTACTGGTAGAAGGCCTGTGGAAGTCATCAAGGGGAAAAATTGCAGAAATCTGGTGTCTTGGGTGTTTCAGATGAAATCTGAGAATAAGGCGCAGGAAATTTTTGATCCAGCAATTTGGCAGAAGGATCATGAGAAGCAGCTATTGGAGGTTCTTGCCATTGCTTTTAAATGTCTAGACCAAGATCCTAGGCAGAGACCCTCTATTGAAGTAGTTGTTTCATGGCTTGATAGTGTAAGATTTGATGGTTATCAACAATGA 3165 0.4212 MVLLRCFPVTLLQWCFLACLLCLSLGLNNQAPSCDPHDLSALKEFAGNLTSGSIITAWSNDTVCCNWLGVVCDNVTGGGGTVASRVTKLILPEMGLNGTISPSLAQLDQLNMLNLSFNHLKGGLPVEFSRLKQLKFLDVSHNMLFGPVAGALSGLQSIEVLNISSNLLSGVLFPFEEFPHLLALNMSNNSFTGRFNSQICSSSKDLHTLDLSANHFVGGLEGLDNCTTSLQQLHLDSNLFSGPLPDSLYSMSALEKLSVCANNLSGQLSKQLSKLSNLKALVLSGNRFSGEIPNVFGDLLQLEELVAHANSFSGPLPSTLALCPKLRVLDLKNNSLSGPIDLNFTGLSKLQTLDLASNHFIGPLPTSLSFCRELKILSLARNGLTGSVPENYANLTSLLFVSLSNNSIQNFSGAISVLQQCKNLTTLILTKNFHGEEISASVTVGFESLMILALGNCGLKGRIPSWLSNCRKLAVLDLSWNHLNGSIPSWIGQMDNLFYLEFSNNSLTGEIPKSLTELKGLTCPNCSRASLAAFAFIPLFVKRNTSASGLQYNQASSFPPSIYLSNNVLSGNIWPEIGRLKALHVLDLSRNNITGTIPSTISEMENLESLDLSYNDLSGEIPQSFNNLTFLSKFSVAYNRLDGPIPTGGQFLSFPSSSFEGNLGLCRDIDSPCKIVNNTRPIISSGSSRKLGRGNVLGITISIGIGLALLLAIILLKMSKRDEDKPIDNFDEELNSRPHRLSEALVSSKLVLFQNSDCKDLTVADLLKSTNNFNQANIIGCGGFGLVYKAYLPNGTKAAIKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGSDRLLIYSYLENGSLDYWLHECVDENSALKWDARLKIAQGAARGLAYLHKGCEPYIVHRDVKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVFQMKSENKAQEIFDPAIWQKDHEKQLLEVLAIAFKCLDQDPRQRPSIEVVVSWLDSVRFDGYQQ 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1163 1054 Gene3D Ribonuclease Inhibitor 171 266 IPR032675 -
Ssu8g1163 1054 SMART serkin_6 773 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1163 1054 SUPERFAMILY RNI-like 227 524 - -
Ssu8g1163 1054 ProSiteProfiles Protein kinase domain profile. 773 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1163 1054 PANTHER PHYTOSULFOKINE RECEPTOR 2 284 437 - -
Ssu8g1163 1054 Gene3D Ribonuclease Inhibitor 267 366 IPR032675 -
Ssu8g1163 1054 PRINTS Leucine-rich repeat signature 583 596 - -
Ssu8g1163 1054 PRINTS Leucine-rich repeat signature 604 617 - -
Ssu8g1163 1054 Gene3D Ribonuclease Inhibitor 38 156 IPR032675 -
Ssu8g1163 1054 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 284 437 - -
Ssu8g1163 1054 PANTHER PHYTOSULFOKINE RECEPTOR 2 563 621 - -
Ssu8g1163 1054 PANTHER PHYTOSULFOKINE RECEPTOR 2 445 512 - -
Ssu8g1163 1054 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Ssu8g1163 1054 SUPERFAMILY L domain-like 58 313 - -
Ssu8g1163 1054 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 563 621 - -
Ssu8g1163 1054 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 445 512 - -
Ssu8g1163 1054 PANTHER PHYTOSULFOKINE RECEPTOR 2 177 284 - -
Ssu8g1163 1054 PANTHER PHYTOSULFOKINE RECEPTOR 2 32 165 - -
Ssu8g1163 1054 PANTHER PHYTOSULFOKINE RECEPTOR 2 617 1047 - -
Ssu8g1163 1054 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 177 284 - -
Ssu8g1163 1054 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 165 - -
Ssu8g1163 1054 SUPERFAMILY L domain-like 550 679 - -
Ssu8g1163 1054 Pfam Leucine rich repeat 582 641 IPR001611 GO:0005515
Ssu8g1163 1054 SMART LRR_typ_2 107 130 IPR003591 -
Ssu8g1163 1054 SMART LRR_typ_2 131 154 IPR003591 -
Ssu8g1163 1054 SMART LRR_typ_2 395 418 IPR003591 -
Ssu8g1163 1054 SMART LRR_typ_2 347 371 IPR003591 -
Ssu8g1163 1054 SMART LRR_typ_2 580 603 IPR003591 -
Ssu8g1163 1054 SMART LRR_typ_2 604 627 IPR003591 -
Ssu8g1163 1054 SMART LRR_typ_2 470 494 IPR003591 -
Ssu8g1163 1054 SMART LRR_typ_2 275 298 IPR003591 -
Ssu8g1163 1054 Gene3D Phosphorylase Kinase; domain 1 736 848 - -
Ssu8g1163 1054 Pfam Leucine Rich Repeat 349 371 IPR001611 GO:0005515
Ssu8g1163 1054 Gene3D Transferase(Phosphotransferase) domain 1 849 1052 - -
Ssu8g1163 1054 CDD STKc_IRAK 779 1045 - -
Ssu8g1163 1054 ProSitePatterns Protein kinases ATP-binding region signature. 779 801 IPR017441 GO:0005524
Ssu8g1163 1054 SUPERFAMILY Protein kinase-like (PK-like) 755 1044 IPR011009 -
Ssu8g1163 1054 Gene3D Ribonuclease Inhibitor 367 680 IPR032675 -
Ssu8g1163 1054 Pfam Protein kinase domain 774 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1163 1054 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 617 1047 - -
Ssu8g1163 1054 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1163 Ssu-Chr8 20792540 20795704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1163 38 431 Receptor kinase-like Gene Family AT1G55610 25.556 6.85e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Ssu8g1163 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1163 - - gmx:100797812 1852.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1163 8 20792540 20795704 Ssu8g1163 8 20792540 20795704 ECH