Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1160 ATGGAACTTCAGATACGTGTTTGTCTCTTGCTGTTTCTCTCTAGTCTCCTCTCGGGCTCTCAAGCCTACACGTTCTACGTTGGTGGAAGAGATGGGTGGGTTTTGTACCCTTCAGAGAACTTCAATCACTGGGCTGAAAGGACGAGGTTCCAAGTCAGCGACACTCTGGTTTTCAAGTACAAGAAGGGCTCAGACACGGTGTTGGAGGTGAACAAGGACGACTATGAGAAATGTAACAAGAAGAACCCGATCAAGAAGCTTGAGGATGGTGACTCGGAGTTTCAGTTTGATCGATCGGGTCCTTTTTACTTCATCAGTGGCAAAGATGATAATTGTGAAAAGGGTCAGAAACTGATCATTGTGGTGTTGGCTGTGAGAGAGCCACCACCATATTCTCCAACACCTCCAAACACTCCCTATGTTCCAATTCCCCCAAAAGCTCCTTCTCCCGTTAACCAACCTCCTTATGTTCCAAAACCTCCTCATCCTCCAAAAGCTCCTTATCCACCTTATGTTCCAAAACCTCCTCATCCTCCTACTGTCCCAACTCCTCCAAAAACTCCTTATCCACCTTATGTTCCAACACCCCCTCAAACTCCCACTGTGCCTACTACTCCTCCAAAAACTCCTTATCCACCCTATGTTCCAACCCCACCTCAGGCTCCTTCCCCTGTTTATAGTCCTCCCTATGTTCCAACCCCTCCAAAAACACCTTCTCCTATTTACAGTCCTCCTTATGTTCCTCCAAAAGCACCTTCACCTATTCATTATCCACCCTACGTCCCAACACCTCCAAAAACTCCTTCCCCTATCTACACTCCTCCCAATATCCCTACTACTCCTCCAAAAACTCCTTCTCCTACTTATAGTCCTCCCAATGCCCCTACTACTCCTCCAAAAGCACCTTCACCTACTAATCACCCTCCCTATGTTCCAACACCTCCACATACTCCTTCCCCTGTCTATAGTCCTCCCAATGTTCCAACCCCTCCCAAAACACCTTCTCCTGCTTATAGTCCTCCAAATGTTCCCACTCCTCCAAAAGCTCCTTCCCCTAATAATCATCCACCCTATGTTCCAACACCTCCCAAAACACCTACTCCTGCTTATCCACCCTATGTTCCAACACCTCCAAAAAACACCATCTCCTACTTACAGTCCTCCAAATGTCCCCAATCCTCCAAAAACTCCTTCCCCTGGCCACCAGCCTTATGTCCCAACCCCTCCAAACACTCCCTCTCCTATATCTCAGCCTCCCTACCCTCCAAAAACCCCTTCCCCTACCCATCAACCACCCTTTGTACCTATAACCCCATCTCCAACTTCTCAACCCCCGTATGTGCCAACACCACCAAAAACTCCTTCGCCTATTTCCCAACCTCCCTACATTGCAACACCTCCAAAAACTCCTTCCCCAACATCTCATCCACCTTACATTCCAACACCTCCAAACACCCCCTCTCCATTCTCTCAACCGCCCTATCCCTATGCCCCAACTCCAAAATCCAATTCCCCAATTTCCCAACCCCCATCATCACCACTCACACCAATATCACCCTATCCATCCACCAACCCTCCCTCCACATCACTAGCCACCGTCAGTTTCAACTGCCCCCACTTACCCACCTTCCGTCCTCGCTCCGGCCACTGCTCCGGTGCCGGCCACAACATCGCCGCCATCCCCGTCTCCGGCAGCCGTCACTCCCGCTGCTTCTCCTCCGGCGTCACTTCCGGCAGCCGCAACTCCCTCACCGTCGTCGACGAAGACTCCGGGATCGTCACAAACGCCGTCGTCAGTCGAACGAAACGGCGCCAGCCCGGCCAAACGGCGCGTCGTCTGCAGCGCCGTCCCGGTTAGGGGCGTATGCACTAACCATTCTGGTCGGTGCTGCTCTAAGTACCATTCTTGGTTAG 1914 0.512 MELQIRVCLLLFLSSLLSGSQAYTFYVGGRDGWVLYPSENFNHWAERTRFQVSDTLVFKYKKGSDTVLEVNKDDYEKCNKKNPIKKLEDGDSEFQFDRSGPFYFISGKDDNCEKGQKLIIVVLAVREPPPYSPTPPNTPYVPIPPKAPSPVNQPPYVPKPPHPPKAPYPPYVPKPPHPPTVPTPPKTPYPPYVPTPPQTPTVPTTPPKTPYPPYVPTPPQAPSPVYSPPYVPTPPKTPSPIYSPPYVPPKAPSPIHYPPYVPTPPKTPSPIYTPPNIPTTPPKTPSPTYSPPNAPTTPPKAPSPTNHPPYVPTPPHTPSPVYSPPNVPTPPKTPSPAYSPPNVPTPPKAPSPNNHPPYVPTPPKTPTPAYPPYVPTPPKNTISYLQSSKCPQSSKNSFPWPPALCPNPSKHSLSYISASLPSKNPFPYPSTTLCTYNPISNFSTPVCANTTKNSFAYFPTSLHCNTSKNSFPNISSTLHSNTSKHPLSILSTALSLCPNSKIQFPNFPTPIITTHTNITLSIHQPSLHITSHRQFQLPPLTHLPSSLRPLLRCRPQHRRHPRLRQPSLPLLLLRRHFRQPQLPHRRRRRLRDRHKRRRQSNETAPARPNGASSAAPSRLGAYALTILVGAALSTILG 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1160 637 MobiDBLite consensus disorder prediction 578 596 - -
Ssu8g1160 637 MobiDBLite consensus disorder prediction 576 615 - -
Ssu8g1160 637 CDD OsENODL1_like 23 123 IPR041846 -
Ssu8g1160 637 ProSiteProfiles Phytocyanin domain profile. 23 124 IPR003245 GO:0009055
Ssu8g1160 637 PANTHER BLUE COPPER PROTEIN 1 305 IPR039391 GO:0009055
Ssu8g1160 637 Gene3D - 21 126 IPR008972 -
Ssu8g1160 637 Pfam Plastocyanin-like domain 33 116 IPR003245 GO:0009055
Ssu8g1160 637 MobiDBLite consensus disorder prediction 258 375 - -
Ssu8g1160 637 SUPERFAMILY Cupredoxins 22 123 IPR008972 -
Ssu8g1160 637 PANTHER EARLY NODULIN-LIKE PROTEIN 2 1 305 - -
Ssu8g1160 637 PRINTS Proline rich extensin signature 185 210 - -
Ssu8g1160 637 PRINTS Proline rich extensin signature 165 182 - -
Ssu8g1160 637 PRINTS Proline rich extensin signature 124 145 - -
Ssu8g1160 637 PRINTS Proline rich extensin signature 148 164 - -
Ssu8g1160 637 MobiDBLite consensus disorder prediction 130 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1160 Ssu-Chr8 20652602 20654621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1160 2 188 Phytocyanin Superfamily AT5G53870 46.354 6.98e-50 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1160 - - ccaj:109806081 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1160 8 20652602 20654621 Ssu8g1160 8 20652602 20654621 ECH