Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu8g1138 | ATGGTGCTCGGAAAATCCTGCACGCAACCAGAAATCATACTCTTTAGATCAATTGCAATCGACGTTGCGGAAGGAAAATTTGACACCCGAAATGGAAGGACGCACAAAGTATATGCAATGGGTCAAGAAGTTGTGGTGCAAACTGAGGCAAATACTTGTGAGAACCTGGCTGATACATACAGGGGTCCATGCTTCACCACCGCCAGCTGCGATGATCACTGCAAGAATAAAGAACACTTACTCAGCGGCAGGTGCAGGGACGATTTTCGCTGTTGGTGCACCAGAAACTGTTAA | 294 | 0.4694 | MVLGKSCTQPEIILFRSIAIDVAEGKFDTRNGRTHKVYAMGQEVVVQTEANTCENLADTYRGPCFTTASCDDHCKNKEHLLSGRCRDDFRCWCTRNC | 97 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu8g1138 | 97 | Pfam | Gamma-thionin family | 52 | 97 | - | - | |
| Ssu8g1138 | 97 | PANTHER | DEFENSIN | 43 | 97 | - | - | |
| Ssu8g1138 | 97 | SMART | gth_4 | 52 | 97 | IPR003614 | GO:0006952 | |
| Ssu8g1138 | 97 | PANTHER | DEFENSIN-LIKE PROTEIN 1 | 43 | 97 | - | - | |
| Ssu8g1138 | 97 | SUPERFAMILY | Scorpion toxin-like | 52 | 97 | IPR036574 | - | |
| Ssu8g1138 | 97 | CDD | Knot1 | 62 | 94 | IPR003614 | GO:0006952 | |
| Ssu8g1138 | 97 | Gene3D | - | 51 | 97 | IPR036574 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu8g1138 | Ssu-Chr8 | 20216631 | 20232271 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu8g1138 | 46 | 97 | Plant Defensins Gene Families | AT2G02130 | 43.396 | 6.69e-08 | 44.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu8g1138 | - | - | gmx:100779239 | 125.561 |