Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1115 ATGAGCAAAGCCCTGGGAGAAGACGAAGACGACGAAGAACGACAACAAGAAGACTGTTTCTACGACTCCCACGACCGCCTGCTCTCCCTCTCCTCCTCCTGCTCCTGCTCCAACTCCAACTCCGACAACGACAACGACGACGACACCCCCCGAAACGACGCCGTCGCCTGCAACCCCAATTTCGCCCTCAACAACTACGACATATGGATCTCCCAGCCCTCCTCCGTCTCCGAGCGCCGCACGCGCCTCCTCCTCTCCCTCGGCCTCACGCGCCCCAACCCAAACCCTCTCCGATCCAATTCCGACACCGCCGCCTCCTCCCTCGCCGACCCCCCCAATAAGCCCCCCAATCCGAAACCTCCCCCCGCGTCCAGCGAAGAAGCGTGCACGATACGGGATCTCGACAACGGGAACGAGTTCGTGGTGAACGAGGTGAACGAGTTCGTGGTGAGCGAGGTCGCCACGGGGCGGCAGCTGACGATGGAGGAGTTCGAGATGACGGTGGGGCGCTCCCCCATCGTGACGGAGCTGATGCGGCGGCAGAATGTCGAAGAGGCCAGCGTGGACGCCAATGCGAGCGGTTCCAAGGCGAAGAAAAAGGGAGGGGGGTGGTTGAGGAGCATCAAGAGCGTGGTGGGAGGGCACCGGGATCGCCGGAGCAGCGACGAGAGGGACACTTCGTCGGAGAAGGGAGGGCGGCGGTCGAGCTCGGCCACCGACGACAGTCAGGACGGGGCGTTTCACGGGCCGGAGAGGGTGCGGGTGAAGCAGTACGGGAAGAGTTGCAAGGAGGTGACTGCGCTGTACAAGAGCCAGGAGATTCAGGCGCACAGTGGGTCCATTTGGAGCATTAAGTTCAGCTTGGATGGGAAGTATTTGGCGAGCGCCGGGGAGGATTGTGTGATTCATGTTTGGCAGGTGGTGGAGGGGGAGAAGAAGGGGGAGCTGCTGCTGTTGGACAGGGAGAAGGGGGAGGAGGGGAATGTGAATATGTTGGTGGTGGTGAATGGGTCGCCGGAGCCGATGGCGGCCGCCGCGATGCTGTCGCCGCTCGGGGAcggggagaggaagaggaagggGAGGCCCAGCGTGAGCAGGAAGTCGTTGAGCTTGGACCAGTTTGTGGTGCCGCAGACCCCGTTTGCGCTTGCTGACAAACCCGTTTGCTCCTTTCAGGGCCATCTGCATGATGTGCTTGACCTCTCATGGTCCAAGACTCAGCACTTGCTCTCATCTTCAATGGACAAAACCGTACGGCTGTGGCATTTGTCTAGCAAGTcttgtttgaaaatattttcacacaGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAATTACTTCATTAGTGGATCTTTGGACGCTAAAGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGACTGATCTGCATGAGATGGTCACTGCTGCGTGTTATACGCCTGATGGTCAGGGTGCACTAATTGGTTCATACAAGGGTAGCTGCCATTTATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTCAGATCAATCTGcagaacaagaaaaagaaatcacaTCACAAGAAAATTACTGGTTTCCAGTTTGCCCCCGGAAGTTCATCAGAATTACTCATCACATCTGCTGACTCACGAATTCGGGTTGTTGATGGTGTTGATCTGGTTCACAAGTTTAAAGGCTTTCGAAATGCAACTAGCCCGATTTCAGCATCCCTCACAGAAAATGGTAAATACGTTGTCGCAGCAAGTGAGGACTCCCATGTATACATCTGGAAAAATGAAGCTGATTGCAGGCCTAACAGAAGTAAAGGTGTCACTGTCACACGATCATATGAGCATTTTCACTGCAAAGATGTGTCAGTGGCCATACCCTGGCCAGGTATGGGTGATACATGGGACATGCAAGATACATTTTCTGGAGAACAACCCGAGCTTGATAACAATGCTGATGATGTGTCATCAGCCAATCATCCTCCTACCCCTGTAGAGGAAAACTTTGTTAATGAGGGCTCAAGATCTGCATCAGTTTACAGCAATAGTCCACGCCATGCAACCATTGCAAGTGCCACAAATAGTTACTTTTTTGATAGAATTTCTGCAACATGGCCAGAGGAAAAACTTCTTCTAGCTGCAAGAAACCAAAGCCCTCGTGTCAGCATGGATTTCTCTAATGGGGCAAGTCAAAAAATGCCAGCCTGGGGTATGGTGATTGTAACTGCCGGCCTTCGTGGGGAAATTAGAACTTTCCAAAATTTTGGATTACCACTTCGGATATGA 2298 0.5174 MSKALGEDEDDEERQQEDCFYDSHDRLLSLSSSCSCSNSNSDNDNDDDTPRNDAVACNPNFALNNYDIWISQPSSVSERRTRLLLSLGLTRPNPNPLRSNSDTAASSLADPPNKPPNPKPPPASSEEACTIRDLDNGNEFVVNEVNEFVVSEVATGRQLTMEEFEMTVGRSPIVTELMRRQNVEEASVDANASGSKAKKKGGGWLRSIKSVVGGHRDRRSSDERDTSSEKGGRRSSSATDDSQDGAFHGPERVRVKQYGKSCKEVTALYKSQEIQAHSGSIWSIKFSLDGKYLASAGEDCVIHVWQVVEGEKKGELLLLDREKGEEGNVNMLVVVNGSPEPMAAAAMLSPLGDGERKRKGRPSVSRKSLSLDQFVVPQTPFALADKPVCSFQGHLHDVLDLSWSKTQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDNYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALIGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHHKKITGFQFAPGSSSELLITSADSRIRVVDGVDLVHKFKGFRNATSPISASLTENGKYVVAASEDSHVYIWKNEADCRPNRSKGVTVTRSYEHFHCKDVSVAIPWPGMGDTWDMQDTFSGEQPELDNNADDVSSANHPPTPVEENFVNEGSRSASVYSNSPRHATIASATNSYFFDRISATWPEEKLLLAARNQSPRVSMDFSNGASQKMPAWGMVIVTAGLRGEIRTFQNFGLPLRI 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1115 765 MobiDBLite consensus disorder prediction 32 53 - -
Ssu8g1115 765 Pfam WD domain, G-beta repeat 562 599 IPR001680 GO:0005515
Ssu8g1115 765 Pfam WD domain, G-beta repeat 386 421 IPR001680 GO:0005515
Ssu8g1115 765 Pfam WD domain, G-beta repeat 273 305 IPR001680 GO:0005515
Ssu8g1115 765 Pfam WD domain, G-beta repeat 427 464 IPR001680 GO:0005515
Ssu8g1115 765 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 431 465 - -
Ssu8g1115 765 MobiDBLite consensus disorder prediction 1 20 - -
Ssu8g1115 765 MobiDBLite consensus disorder prediction 643 669 - -
Ssu8g1115 765 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 431 IPR001680 GO:0005515
Ssu8g1115 765 MobiDBLite consensus disorder prediction 207 253 - -
Ssu8g1115 765 SMART WD40_4 558 599 IPR001680 GO:0005515
Ssu8g1115 765 SMART WD40_4 467 505 IPR001680 GO:0005515
Ssu8g1115 765 SMART WD40_4 512 557 IPR001680 GO:0005515
Ssu8g1115 765 SMART WD40_4 425 464 IPR001680 GO:0005515
Ssu8g1115 765 SMART WD40_4 384 422 IPR001680 GO:0005515
Ssu8g1115 765 SMART WD40_4 267 306 IPR001680 GO:0005515
Ssu8g1115 765 MobiDBLite consensus disorder prediction 211 237 - -
Ssu8g1115 765 SUPERFAMILY WD40 repeat-like 269 600 IPR036322 GO:0005515
Ssu8g1115 765 PRINTS G protein beta WD-40 repeat signature 409 423 IPR020472 -
Ssu8g1115 765 PRINTS G protein beta WD-40 repeat signature 293 307 IPR020472 -
Ssu8g1115 765 PRINTS G protein beta WD-40 repeat signature 451 465 IPR020472 -
Ssu8g1115 765 Gene3D - 368 623 IPR015943 GO:0005515
Ssu8g1115 765 Gene3D - 251 334 IPR015943 GO:0005515
Ssu8g1115 765 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 9 100 - -
Ssu8g1115 765 PANTHER WD REPEAT DOMAIN 44 9 100 IPR040324 -
Ssu8g1115 765 MobiDBLite consensus disorder prediction 88 128 - -
Ssu8g1115 765 ProSiteProfiles Trp-Asp (WD) repeats profile. 431 465 IPR001680 GO:0005515
Ssu8g1115 765 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 126 765 - -
Ssu8g1115 765 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 274 307 - -
Ssu8g1115 765 MobiDBLite consensus disorder prediction 92 110 - -
Ssu8g1115 765 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 315 IPR001680 GO:0005515
Ssu8g1115 765 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 391 425 - -
Ssu8g1115 765 PANTHER WD REPEAT DOMAIN 44 126 765 IPR040324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1115 Ssu-Chr8 19823007 19828164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1115 379 596 U-box Gene Family AT1G04510 27.311 1.07e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1115 K20241 - gmx:100815065 1185.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1115 8 19823007 19828164 Ssu8g1115 8 19823007 19828164 ECH