Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1111 ATGGATCAAGAGATGGCAGACATAGAGTCACAAACTAAGAAAATCCCCGACATATTCCACAAAGGAAAACGTCCGGTAATTCTTCAGTTTGATGATGTTGTCTATAAAATTAAGACCAAGAAAGGTGGACTACTTGTGAAGAACAGGGaagcagaagaaaaagagatactGAAGGGAGTGACAGGTGTTGTTGAACCTGGTGAAATGCTAGCCATGCTAGGTCCATCTGGGAGTGGCAAAACAACTCTGCTCACAGCATTGGGAGGCAGGCTTGGAGGGAAGCTTTATGGAAGCATAACTTACAATGGTGAAGCCTTCTCAAATGCAATAAAGAGGAACACTGGCTTTGTTACCCAAGATGATGTTCTCTACCCCCACTTGACTGTGACTGAGACCCTAGTGTTCACTTCACTTCTCAGATTGCCCAACAGTGTCACCAAAGAGGAGAAAGTTGAGCATGCAAAAGCTGTGATAGATCAACTTGGTTTAACCAAGTGCAAGGATAGCATAGTTGGAAGCCCTTACTTGAGGGGGGTTTCTgggggagagagaaagagggttAGCATTGGACAAGAACTACTCATAAACCCAAGTTTGTTGTTTCTTGATGAACCTACCTCTGGTCTAGACTCAACCACAGCACAAAGAATTGTCTCAACCTTGTGGGAGCTAGCAAGTGGGGGGAGAACTATTGTGATGACAATACACCAACCTTCAAGTAGGCTATACTACCTATTTCATAAGGTGCTGTTGCTATCAGAAGGGAACACATTGTATTTTGGAAAGGGATCTGAagccattgaatatttttctaatattggATATGCCCCAGCATTGGCCATGAACCCTTCAGACTTCCTTTTGGATCTTGCAAACgGTATCTACACTGATGAATTGAATGAGGATCATGCCATAGATAAACAGAAATTGATTGCGGTATGCAAGAGAAACTTTGCAGCACAATTGAAGCCAGCATTTCAAGGAATCAGTGACTCTGTTAAAAGCCAGAATAGATTTCAAGAAAAAGGCTTTGGAAAATGGCCTACCAGCTGGTCGCAGCAATTCTTTGTGCTGTTAAGAAGAGACATCAAAGAGAGACGGCATGAATCATTCTCGGGTTTGCGGATTGGTCAGGTTCTTGTGGTTGCACTTATTTCAGGACTACTGTGGTATAAGTCCGATCTTTCACACTTGCAGGATCagATTGGGCTTCTATTCTTCATGTCTGGCTTTTGGGGATTCGTCCCTCTCTTTCAAGCAATTTTCACCTTTCCCCAAGAGCTCATGATGCTAGAGAAGGAAAGATCCTCTGGAATGTACAGGCTTTCCTCATACTTCATGTCAAGGATGGTAGCTGACCTTCCCATGGAACTTGTTCTTCCCACCATATTTCTTTTCATAACCTATTGGATGGCAGGGTTGAAAGCTAACGCTGTCAACTTCTTGTGCACATTGCTCACACTCCTACTCAATGTGTTAGTCTCACAAGGCCTAGGCCTTGCCCTCGGTGCTTCTGTAATGGATCAAAAAGCTGCAACCACACTTGCCTCAGTGATCATGCTATGCTTCTTGCTGGCTGGTGGATTTTATGTTCAGCATGTTCCAAAATTTATAGCATGGGTGAAGTACATTTCCATCAGCTTCTACACATACCAGCTCTTTATTGGGTCTCAGTATAACTATGGAGAGACATATCCTTGTTCTAATGGCCGGTGTCCAATTGCAGAATTTCCTTCTATAAAGGAAATGGGGGTTCATTTTCATTTGCACGAGCAACTCATGGCTGCATCAGCTCTAGTGATAATGCTAATAGGTTACAGACTTATAGCTTATCTTGCTCTTATGAGGATTGGAGTGACAAAGAACTAG 1869 0.4157 MDQEMADIESQTKKIPDIFHKGKRPVILQFDDVVYKIKTKKGGLLVKNREAEEKEILKGVTGVVEPGEMLAMLGPSGSGKTTLLTALGGRLGGKLYGSITYNGEAFSNAIKRNTGFVTQDDVLYPHLTVTETLVFTSLLRLPNSVTKEEKVEHAKAVIDQLGLTKCKDSIVGSPYLRGVSGGERKRVSIGQELLINPSLLFLDEPTSGLDSTTAQRIVSTLWELASGGRTIVMTIHQPSSRLYYLFHKVLLLSEGNTLYFGKGSEAIEYFSNIGYAPALAMNPSDFLLDLANGIYTDELNEDHAIDKQKLIAVCKRNFAAQLKPAFQGISDSVKSQNRFQEKGFGKWPTSWSQQFFVLLRRDIKERRHESFSGLRIGQVLVVALISGLLWYKSDLSHLQDQIGLLFFMSGFWGFVPLFQAIFTFPQELMMLEKERSSGMYRLSSYFMSRMVADLPMELVLPTIFLFITYWMAGLKANAVNFLCTLLTLLLNVLVSQGLGLALGASVMDQKAATTLASVIMLCFLLAGGFYVQHVPKFIAWVKYISISFYTYQLFIGSQYNYGETYPCSNGRCPIAEFPSIKEMGVHFHLHEQLMAASALVIMLIGYRLIAYLALMRIGVTKN 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1111 622 Pfam ABC transporter 57 207 IPR003439 GO:0005524
Ssu8g1111 622 ProSitePatterns ABC transporters family signature. 179 193 IPR017871 GO:0005524
Ssu8g1111 622 Pfam ABC-2 type transporter 353 559 IPR013525 GO:0016020|GO:0140359
Ssu8g1111 622 Gene3D - 45 273 IPR027417 -
Ssu8g1111 622 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 7 618 - -
Ssu8g1111 622 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 7 618 - -
Ssu8g1111 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 272 IPR027417 -
Ssu8g1111 622 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 28 279 IPR003439 GO:0005524
Ssu8g1111 622 CDD ABCG_EPDR 25 261 - -
Ssu8g1111 622 Pfam ABC-2 type transporter 236 318 IPR043926 GO:0140359
Ssu8g1111 622 SMART AAA_5 66 264 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1111 Ssu-Chr8 19685557 19688873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1111 55 293 Calmodulin-binding Proteins AT2G36910 28.049 5.71e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1111 K05681 - gmx:100816135 1040.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1111 8 19685557 19688873 Ssu8g1111 8 19685557 19688873 ECH