Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1110 ATGCTTTCGAAAATGGGAGTTCCAGAGAAAGACCTTCTTTCCCAATTGAGTTTGCCCCCTGGCTTTCGGTTTTACCCCACCGACGAGGAGCTTCTCGTTCAGTATCTATGCCGCAAGGTCGCTGGCCACGATTTCGCTCTCCAAATCATTGCCGAAATTGATTTGTACAAGTTCGACCCGTGGCTTCTTccaaGCAAGGCAATTTTCGGGGAGAAGGAATGGTACTTTTTCAGCCCCAGAGACAGAAAATACCCGAACGGATCTCGACCCAACAGAGTAGCCGGATCCGGGTATTGGAAAGCCACCGGAACCGACAAGATCATCACCACCGAAGGTAGAAAAGTTGGCATCAAAAAAGCCCTCGTTTTCTACGTCGGCAAAGCCCCGAAGGGCACCAAAACCAATTGGATCATGCACGAGTATCGCCTCCTCGACTCTTCCCGAAAAAACGGCGGGACCAAGCTTGATGATTGGGTTCTGTGTCGCATATACAAGAAGAACTCGAGCGCGCAGAAGGCCGTGCAAAACGGCGTCGTTTCGAGCAACGAGCACACTCAATACAGCAACGGTTCCTCGTCTTCGTGTTCGTCCCACCTCGACGACGTTCTGGAATCTTTGCCAGCGATCGACGAAAGATGCTTCGCGGTGCCACGTGTCAACTCGatgcagcagcagcagcagggGCAGAAGCTGAATGTTCCGAACCTTGGTGCGGGGGGGTTGGTGGATTGGGCCAACCCTGCGGTTCTGAATTCGGTCGCTGATTTCGTTTCGGGTAACCAAGTCGTGCAGGACCAAACTCAGGGCATGGTGAATTACGGTGGCTGCAATGACCTGTATGTCCCCACGATGTGCCACGTGGACTCGTCGGTTATTCCGCAAAAAATGGAGGAAGAGGTGCAAAGCGGCGTGAGAACCCAACGGGTCGAGAATTCGTGGTTCAACGATTTCGCACAGGGGTTTCCAAACTCGGTGGACACGTGTGGGTTTAAGTACCCGGTTCAGCCGGTCGGGTTCGGGTTCAGGCAATGA 1032 0.5184 MLSKMGVPEKDLLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHDFALQIIAEIDLYKFDPWLLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRKNGGTKLDDWVLCRIYKKNSSAQKAVQNGVVSSNEHTQYSNGSSSSCSSHLDDVLESLPAIDERCFAVPRVNSMQQQQQGQKLNVPNLGAGGLVDWANPAVLNSVADFVSGNQVVQDQTQGMVNYGGCNDLYVPTMCHVDSSVIPQKMEEEVQSGVRTQRVENSWFNDFAQGFPNSVDTCGFKYPVQPVGFGFRQ 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1110 343 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 5 318 - -
Ssu8g1110 343 MobiDBLite consensus disorder prediction 175 194 - -
Ssu8g1110 343 ProSiteProfiles NAC domain profile. 18 166 IPR003441 GO:0003677|GO:0006355
Ssu8g1110 343 Pfam No apical meristem (NAM) protein 19 143 IPR003441 GO:0003677|GO:0006355
Ssu8g1110 343 SUPERFAMILY NAC domain 13 167 IPR036093 GO:0003677|GO:0006355
Ssu8g1110 343 PANTHER NAC TRANSCRIPTION FACTOR 56 5 318 - -
Ssu8g1110 343 Gene3D NAC domain 27 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1110 Ssu-Chr8 19660013 19661558 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1110 5 288 NAC Transcription Factor Family AT3G15500 60.535 3.25e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu8g1110 NAM 6.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1110 - - gmx:732651 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1110 8 19660013 19661558 Ssu8g1110 8 19660013 19661558 ECH