Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1109 ATGGAGAGCACCGACTCATCAACCGGTTCACAACAACCGAACCTGCCACCGGGGTTCCGGTTCCACCCCACCGACGAGGAGCTCGTTGTTCAATACCTCAAGAAAAAAGCAGCTTCTGCTCCTCTTCCGGTAACCATAATCGCTGAGGTTGATCTCTACAAGTTCGATCCATGGGAGCTACCTGCTAAGGCAGCGTTTGGGGAGCAGGAGTGGTATTTCTTTAGTCCGAGGGACAGGAAGTATCCTAACGGAGCGCGACCAAACAGGGCGGCCACATCTGGGTATTGGAAGGCCACGGGGACTGATAAGCCAGTGTTGACCTCTGGGGGGACCCAAAAGGTTGGGGTGAAGAAGGCTTTGGTTTTCTATGGAGGGAAGCCCCCAAGAGGGATCAAAACCAATTGGATCATGCATGAGTATAGGCTTGCTGATAACAAGCCTAACAATAGGCCTCCTGGCTGTGACTTGGGCAACAAGAAAAACTCTCTAAGGCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGGTCTCCCATGGAGCGTGACAGGGAAGATTCAATGGATGACATGATTGGAGGGATTCCTCCTTCCATCAACGTGGGCCACATGAATACGAGGTTTCATCTTTCAAAGATGTCCACGGGCTACAACGGTGCATTATTGGAAAATGACCAGAACTTGTTGGAAGGGATGATGATAGGTAACGGAGGGATGAACACAAGTACTACTACACCTGTTGCCATGTCATCTCAGTTGGGGGCCTCAAACTCCAAGCCAGAGCTTCCTTTTGTGCCAACCATGACTCACTCTTCAAACACCTCCAAGAGGACACTCTCGTCGCTGTATTGGAATGATGAGGATGTGGCAGGTTCTTCTTCACCGAACAAAAGGTTCAATTTGGAAAGTGGGGATAATAATCATGCAAGTGTTGTGAGGACTGATCAAGAGAATGGCACTGCTACCTCTATTGCCACTCTGCTAAATCAGCTTCCCCAAACCCCGTCATTGCACCAACAATCAATGTTGGGATCATTAGGTGATGGGCTACTTAGGACAACATATCAAATACCAGGAATGAATTGGTATGCTTAA 1107 0.4887 MESTDSSTGSQQPNLPPGFRFHPTDEELVVQYLKKKAASAPLPVTIIAEVDLYKFDPWELPAKAAFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKSNTHRSPMERDREDSMDDMIGGIPPSINVGHMNTRFHLSKMSTGYNGALLENDQNLLEGMMIGNGGMNTSTTTPVAMSSQLGASNSKPELPFVPTMTHSSNTSKRTLSSLYWNDEDVAGSSSPNKRFNLESGDNNHASVVRTDQENGTATSIATLLNQLPQTPSLHQQSMLGSLGDGLLRTTYQIPGMNWYA 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1109 368 SUPERFAMILY NAC domain 7 176 IPR036093 GO:0003677|GO:0006355
Ssu8g1109 368 MobiDBLite consensus disorder prediction 1 21 - -
Ssu8g1109 368 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Ssu8g1109 368 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 344 - -
Ssu8g1109 368 MobiDBLite consensus disorder prediction 1 17 - -
Ssu8g1109 368 PANTHER NAC TRANSCRIPTION FACTOR 56 1 344 - -
Ssu8g1109 368 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Ssu8g1109 368 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1109 Ssu-Chr8 19630940 19632641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1109 1 368 NAC Transcription Factor Family AT3G15510 54.805 1.13e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu8g1109 NAM 3.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1109 - - vra:106763825 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1109 8 19630940 19632641 Ssu8g1109 8 19630940 19632641 ECH