Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1096 ATGAACGGGAAGGCCAACGTTTCCAAGGAGCTCAACGCTAAGCACAAGAAgATACTTGAAGGACTTCTTAAATTACCAGAGAATAGGGAATGTGCCGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTTATATGCATGCAGTGTTCAGGAATACATCGAAGTTTGGGGGTACATATATCAAAGGTTCGTTCTGCAACCCTGGACACTTGGCTTCCAGAGCAAGTTGCATTCATTCAATCGATGGGAAATGAGAAAGCAAATAGTTACTGGGAAGCAGAATTACCTCCAAATTATGATAGAGTTGGAATTGAGAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGATTCCAAGAGATGGGAATTCAAAAACACCTTCTGGATTGCAGGAAGAGAAAACTCCTTCACATTGGCAGAAGCCTGCAGAGAGAAGTGGTTATGCTGCTGTTTCTGGGAATACTTTTGAGGAGAGGAAGAGAATCCAACCATCAAATGCAATTCCTGCTACAAGAATCAGTGTTCCTGCTCCTCCCAGAGCACCTGAGCAGGTAACTCCAACTCCTGTTACCAAACCTCAGCATGTTGAGAATGTGGAACCAGTAGCACCACAACCACAAGCTGAAACTTCAAAGCAGGTTACAGACACAGCTCAAAATACCCCTCCAAAAGTTGATTATGCTACAGACCTTTTCAATATGTTATCTATGGATGTCCCCAATGAAAATGGTTCAGAGGCTGCTAGTACAACTGCTGATGATAATCACTGGGCAGGTTTTCAGTCCGCTGCAGAGGTGTCAACAGCTGAGAAGACTAATCCTCTAAAAGCAGCTGATAGTACTCCCCAGTTTGCTTCTGGAATTGAGGATCTTTTCAAAGATTCACCTTCTATGACACCAAGCTTAGCTCCGGAAAAACCACAGAAAGATGTGAAAAATGATATCATGAGCCTCTTTGAGAAGGGCAATATGGTGTCTCCATTTTCTATGCATCAACAGCAGCTTGCCATGCTAGCACAGCAACAGTCTCTTCTAATGGCTGCAGCAGCTAAATCTACTGGTGGGGATCCCAGGTATCCTACTAGCATACAACAACCTAGACCCAATGTTCCTATCCAAAGTTGGCCAGCTACTGGCTACTCAATTTCTGAAGTAATGCCCATGGGTGGTCAGGGAGAGCTGCAAAAACTTATGCAGgGTCAGACTAGGAACATGACCCCAACACATTTTGCAGGGAGCTCTGTTCAATATCCTCCATCCAGTTTCTATGCTATGGGACAAGTTGCTCCAGTTAACGGTATGATGACGACAATGGGAGTGGGTAAACCTCAGTCAGCAGCTCCAGTGTCATCTACCACTTCAAAGTCTGCGAAGGATTATGATTTTTCCTCATTAACACAGGGGATGTTTGCGAAACCCTGA 1437 0.4412 MNGKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWIPRDGNSKTPSGLQEEKTPSHWQKPAERSGYAAVSGNTFEERKRIQPSNAIPATRISVPAPPRAPEQVTPTPVTKPQHVENVEPVAPQPQAETSKQVTDTAQNTPPKVDYATDLFNMLSMDVPNENGSEAASTTADDNHWAGFQSAAEVSTAEKTNPLKAADSTPQFASGIEDLFKDSPSMTPSLAPEKPQKDVKNDIMSLFEKGNMVSPFSMHQQQLAMLAQQQSLLMAAAAKSTGGDPRYPTSIQQPRPNVPIQSWPATGYSISEVMPMGGQGELQKLMQGQTRNMTPTHFAGSSVQYPPSSFYAMGQVAPVNGMMTTMGVGKPQSAAPVSSTTSKSAKDYDFSSLTQGMFAKP 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1096 478 MobiDBLite consensus disorder prediction 124 152 - -
Ssu8g1096 478 CDD ArfGap 19 117 - -
Ssu8g1096 478 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Ssu8g1096 478 MobiDBLite consensus disorder prediction 295 314 - -
Ssu8g1096 478 MobiDBLite consensus disorder prediction 209 227 - -
Ssu8g1096 478 MobiDBLite consensus disorder prediction 357 377 - -
Ssu8g1096 478 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 477 IPR044520 GO:0005096
Ssu8g1096 478 Pfam Putative GTPase activating protein for Arf 17 123 IPR001164 GO:0005096
Ssu8g1096 478 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Ssu8g1096 478 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Ssu8g1096 478 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Ssu8g1096 478 MobiDBLite consensus disorder prediction 176 227 - -
Ssu8g1096 478 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Ssu8g1096 478 PANTHER ARF GTPASE ACTIVATOR 1 477 - -
Ssu8g1096 478 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Ssu8g1096 478 MobiDBLite consensus disorder prediction 362 377 - -
Ssu8g1096 478 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1096 Ssu-Chr8 19295967 19300742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1096 16 123 C2H2 Transcription Factor Family AT4G05330 49.138 3.31e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1096 K12486 - gmx:100789910 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1096 8 19295967 19300742 Ssu8g1096 8 19295967 19300742 ECH