Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1091 ATGGCAGCAACATTGATGGCAGCTACAACAAGCTCTGGCACTGTTCTTAAACCAACTCCCTTCCTTGGCCAAGGCAAGGGTGCCAACGCCAACCCTCTTAGGGATGTTGTCTCCATGGGAACCGGGAAATACACCATGGGCAATGAATTGTGGTATGGACCAGACAGAGTGAAATACTTGGGACCCTTTTCAGCTCAGACCCCTTCATACTTGAAAGGAGAATTCCCAGGGGATTATGGATGGGACACTGCTGGCTTGTCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTgagGTGATCCATGGGCGTTGGGCTATGCTTGGAGCACTAGGATGCATCACCCCAGAGGTGCTAGAGAAGTGGCTGAGGGTGGACTTCAAAGAGCCAGTGTGGTTCAAAGCTGGAGCCCAAATATTCTCAGAAGGGGGCCTTGACTATTTGGGTAACCCAAACCTTGTCCATGCACAAAGCATCCTGGCAGTGCTGGGCTTCCAAGTTGTTCTCATGGGTCTTGTTGAAGGCTTCCGCATCAATGGCCTTGATGGAGTGGGAGAGGGCAACGACCTCTACCCTGGGGGCCAGTACTTTGACCCTCTTGGCCTCGCTGATGACCCTGTCACTTTTGCCGAGCTCAAAGTCAAGGAGATCAAGAATGGAAGGTTGGCCATGTTCTCTATGTTTGGTTTCTTTGTTCAAGCCATTGTCACTGGAAAAGGCCCCTTGGAGAACCTTTTGGACCACCTTGACAACCCTGTGGCTAACAATGCTTGGGTCTATGCCACCAAGTTTGTGCCCGGTTCTTAA 810 0.5111 MAATLMAATTSSGTVLKPTPFLGQGKGANANPLRDVVSMGTGKYTMGNELWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1091 269 Pfam Chlorophyll A-B binding protein 68 235 IPR022796 -
Ssu8g1091 269 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 7 269 - -
Ssu8g1091 269 Gene3D Chlorophyll a/b binding protein domain 58 262 - -
Ssu8g1091 269 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 7 269 IPR001344 GO:0009765|GO:0016020
Ssu8g1091 269 SUPERFAMILY Chlorophyll a-b binding protein 50 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1091 Ssu-Chr8 19206320 19207872 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1091 1 268 Chloroplast and Mitochondria Gene Families AT2G05070 66.426 6.84e-121 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1091 K08914 - gmx:100779387 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1091 8 19206320 19207872 Ssu8g1091 8 19206320 19207872 ECH