Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1090 ATGATGTTATCAGCTTCGATGTCTTCTCTAACGAGGAGTTCGCTGGAGGAGATGCTCGAGTCGCTTCGCCGGAGAGACGAGGAGGAGAGGCCGAAGGACTTGCCGCCGGCATTGCCAGCGCGGCCGCCGTCGAGGGCGCGGTTGCCGCCGGCGAGGAGGTCGTTGCCTAATAACTTCAAGGTCGATGGTGAGATGGGGCACAGAAGGAAGGGTAGTTTTGGGAACAAGAAGATAAAGATGGATGTGGAATCCCCTTATGTAGTTTTATCAgaagagaaagtgagagaaCAATCGGCACCGGATCCTGTTTCAACATCCAATGTGTCTTCTACTGATTGTGAAGCTCCTCCTCCATCCGGGGAGTTGGAGGATGATAATGTTGCTTATTTCATCAGAAAGAAACTTCATGTTTGGTGTAGGCAACCAAGAGGGAAGTGGGAGCTGGGAACGATACAGTCAACTTCAGGAGAGGAAGCAACTGTTTCACTCTCAAACGGAAATGTTATGAAAGTAGCCAGATCAGAGCTTCTACCAGCTAATCCTGATATTTTAGAGGGTGTCGAAGATCTTATACAGCtcagttatttaaatgagccCTCAGTTCTTCACAATCTTCGGTTTAGATATTCTCAGGATATGATTTACAGTAAAGCAGGGCCAATTTTAATTGCACTCAATCCTTTCAAAGATGTCCAGATTTATGGAAACGATTATATCTCAGCTTATAGGCAGAAACTTATGGATAGTCCTCATGTTTATGCTATGGCTGATGCAGCTTATAATGAGATGATGAGAGATGAAGTGAATCAGTCTATTATCATAAGTGGTGAGAGTGGATCTGGGAAAACAGAGACAGCAAAAATTGCTATGCAATACTTAGCTGCTCTTGGTGGTGGCTGTTCTGGAATAGAAAATGAAGTTCTCCagacaaattttatactagAAGCTTTTGGGAATGCAAAAACATCTAGGAATGACAACTCTAGCAGATTTGGGAAGttgattgaaattcatttcagcACAATGGGGAAGATTTGTGGGgcaaaaattcaaacttgtaAGAATGTTCGATCAAGAGTTGTTCAACTTGCCTTGGGCGAGAGGTCATATCACATATTTTATCAACTTTGTGCTGGATCTTCATCTGATCTTAAAGAAAGACTGAATCTTAGGGTGGCTAGCGAATATAAATATCTAAACCAGAGTGACTGCATGACAATTGATGGTGTTGATGATGCTAAAAAGTTTCACAGGCTGATGAAAGCATTGGATGTTATTCGAATGTGCAAAGAGGATCAAGAGCTAGTGTTTAAGATGCTGGCTGCAATATTATGGTTGGGAAATATATCATTCGAAGTTACTGACAATGAAAATCACATTGAGGTGGTGAATGATGAAGCTGTTACAAATGCTGCTTTGCTAATGGGTTGCAGTTCTCAGGAGCTAATGGCAGCATTATCTACCCATAAAATCCAAGCTGGCAAGGATACTATTACCAAGACATTGACCTTGCGGCAGGCAATCGATGCAAGAGATGCATTAGCAAAATTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGTACAAGTTAATAAGTCACTTGAAGTGGGTAAACGACATACTGGGAGATCCATAAGTATCCTTGATATTTATGGGTTTGAGTCATTCCAGAATAACAGCTTTGAACAATTTTGTATAAACTATGCCAATGAGAGGCTTCAACAACATTTCAATCGGCATCTGTTTAAACTTGAGCAGGAGGACTACGAATTAGATGGCATTGATTGGACCAAAGTAGATTTTGAGGACAATCAAAAGTGTTTGGATCTCTTTGAGAAGAAGCCTCTGGGGCTATTCTCTTTGTTGGACGAGGAATCAAATTTCCCCAGGGCCTCTGATCTAACACTTGCCAACAAACTTAAGCAGCACCTGCACACTAATCCTTGCTTTAAAGGGGAAAGAGGCAGGGCTTTTAGTGTCTGTCATTATGCAGGGGAGGTTTTGTACGATACAACTGGCTTCCTAGAAAAGAACAGAGATCCACTGCCATCTGATTCCATTCAACTGCTGTCATCGTGTAGTTGTGAACTGCTACAGTTGTTCTCCAAGATGCTTAATCAGTCTCAGAAGCAATCAAATTCCTTGCATGGAGGTGCTCTGGACTCACAAAAGCAGAGTGTTGGCACAAAGTTCAAGGGTCAATTGTTCAAGTTGATGCATCAGTTGGAGAGCACCACGCCTCACTTTATTTGCTGTATAAAGCCAAATACTAAGCAACTTCCTAGAATATATGATGAAGATCTTGTACTACAACAGCTCAAGTGTTGTGGAGTTTTGGAGGTTGTTAGGATTTCAAGGGCTGGATATCCTACTCGAATGACACATCAAGAATTTTCCAGAAGGTATGGGTTTCTGCTTTCTGAGGCAAACACATCTCAGGATCCATTGAGCATTTCAGTTGCTGTTTTGCAACAGTTTAATATCCCTCCCGAAATGTACCAAGTTGGCTTCACCAAACTGTATCTTCGAACAGGGCAGATTGGGGCACTGGAGGACAGGAGAAAACAGCTTTTGCAGGGAATACTTGGGGTTCAAAAATCCTTTCGTAGTTATCAAGCTTGTCGTCATTACCATGAACTTAAGAAAGGAGTGACTACTTTACAATCATTTGTTCGTGGAGAAATTGCAAGAAGGGAATATGGTGTTATGGTGAAGTCTTCTATGACTATTTCTTCTGAAAATATTGAGGAGATAAAGGCAGTCATAATACTACAATCTGTAATTCGTGGGTGGCTGGTTCGAAAGCATGCTAGTGGCTTGAACAAGTTTAAGAAATATCCTGAAAATGCAAAACCTAGGCGAAAGTCACGTGTGAAGATGCCTGAAGTAAAGGATGTGTCCAGTGAGCGAGTCCAGAATCTGCCTTCAGCTTTAGCAGAACTCCAAAGGCGGGTTGTCAAGGCCGAAGCTACCATAGAGCAAAAGGAAGAGGAGAATGCCGAATTGAAGGAACAGCTAAAGCAATTTGAGAGTAGGTGGATTGAATATGAGAAAAGGATGAAATCAATGGAGGAGATGTGGCAAAAACAGATGGCATCTTTGCAAATGAGTCTTGCTGCTGCTAGAAAGAGCCTTGCTTCGGAGAATGCCAGCGCTCAACTTGCAAGACGTGATGTTGCATCACCTCTCGGCTATGAATCAGAAGATGCTACTTCTATGGGATCTCGAACTCCTCCTCGAACGCCTGGTGCAAGCACACCTTTGAAGTATTCTAGTAGTCTTTCTGAAGCAGCAGGGAGAGATGCTAATGGCACTTTGACTTCAGTCAGCAACCTGATGAAGGAATTTGAGCAACGCAGACAGACCTTTGATGATGATGCCAGAGCTCTGGTTGAGGTTAAAACAGGTCAATCTGCTAACACGAATTCCGTTGAAGAGCTTCGGAAACTGAAACATATGTTTGAGGGGTGGAAGAAAGAATACAAGGCTAGACTGAGAGAGACAAAAACAAGACTCCATAAATTAGGGAATTCAGAAATGGATAAAAGTCGGCGGACATGGTGGGGGAAATTGAGTTCTAGAGCTTTATAG 3591 0.4166 MMLSASMSSLTRSSLEEMLESLRRRDEEERPKDLPPALPARPPSRARLPPARRSLPNNFKVDGEMGHRRKGSFGNKKIKMDVESPYVVLSEEKVREQSAPDPVSTSNVSSTDCEAPPPSGELEDDNVAYFIRKKLHVWCRQPRGKWELGTIQSTSGEEATVSLSNGNVMKVARSELLPANPDILEGVEDLIQLSYLNEPSVLHNLRFRYSQDMIYSKAGPILIALNPFKDVQIYGNDYISAYRQKLMDSPHVYAMADAAYNEMMRDEVNQSIIISGESGSGKTETAKIAMQYLAALGGGCSGIENEVLQTNFILEAFGNAKTSRNDNSSRFGKLIEIHFSTMGKICGAKIQTCKNVRSRVVQLALGERSYHIFYQLCAGSSSDLKERLNLRVASEYKYLNQSDCMTIDGVDDAKKFHRLMKALDVIRMCKEDQELVFKMLAAILWLGNISFEVTDNENHIEVVNDEAVTNAALLMGCSSQELMAALSTHKIQAGKDTITKTLTLRQAIDARDALAKFIYASLFDWLVVQVNKSLEVGKRHTGRSISILDIYGFESFQNNSFEQFCINYANERLQQHFNRHLFKLEQEDYELDGIDWTKVDFEDNQKCLDLFEKKPLGLFSLLDEESNFPRASDLTLANKLKQHLHTNPCFKGERGRAFSVCHYAGEVLYDTTGFLEKNRDPLPSDSIQLLSSCSCELLQLFSKMLNQSQKQSNSLHGGALDSQKQSVGTKFKGQLFKLMHQLESTTPHFICCIKPNTKQLPRIYDEDLVLQQLKCCGVLEVVRISRAGYPTRMTHQEFSRRYGFLLSEANTSQDPLSISVAVLQQFNIPPEMYQVGFTKLYLRTGQIGALEDRRKQLLQGILGVQKSFRSYQACRHYHELKKGVTTLQSFVRGEIARREYGVMVKSSMTISSENIEEIKAVIILQSVIRGWLVRKHASGLNKFKKYPENAKPRRKSRVKMPEVKDVSSERVQNLPSALAELQRRVVKAEATIEQKEEENAELKEQLKQFESRWIEYEKRMKSMEEMWQKQMASLQMSLAAARKSLASENASAQLARRDVASPLGYESEDATSMGSRTPPRTPGASTPLKYSSSLSEAAGRDANGTLTSVSNLMKEFEQRRQTFDDDARALVEVKTGQSANTNSVEELRKLKHMFEGWKKEYKARLRETKTRLHKLGNSEMDKSRRTWWGKLSSRAL 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1090 1196 Gene3D - 368 424 - -
Ssu8g1090 1196 SMART MYSc_2a 179 856 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu8g1090 1196 PANTHER MYOSIN-2 ISOFORM X1 124 1194 - -
Ssu8g1090 1196 Gene3D - 861 907 - -
Ssu8g1090 1196 Gene3D - 789 856 - -
Ssu8g1090 1196 Coils Coil 1158 1178 - -
Ssu8g1090 1196 MobiDBLite consensus disorder prediction 1 77 - -
Ssu8g1090 1196 MobiDBLite consensus disorder prediction 1068 1102 - -
Ssu8g1090 1196 CDD MYSc_Myo8 199 843 IPR036022 -
Ssu8g1090 1196 Gene3D Myosin VI head, motor domain, U50 subdomain 425 533 - -
Ssu8g1090 1196 SMART iq_5 916 938 IPR000048 GO:0005515
Ssu8g1090 1196 SMART iq_5 879 901 IPR000048 GO:0005515
Ssu8g1090 1196 SMART iq_5 856 878 IPR000048 GO:0005515
Ssu8g1090 1196 MobiDBLite consensus disorder prediction 91 121 - -
Ssu8g1090 1196 MobiDBLite consensus disorder prediction 62 77 - -
Ssu8g1090 1196 PRINTS Myosin heavy chain signature 215 234 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu8g1090 1196 PRINTS Myosin heavy chain signature 597 625 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu8g1090 1196 PRINTS Myosin heavy chain signature 544 572 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu8g1090 1196 PRINTS Myosin heavy chain signature 312 339 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu8g1090 1196 PRINTS Myosin heavy chain signature 269 294 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu8g1090 1196 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 132 181 IPR004009 GO:0003774|GO:0005524|GO:0016459
Ssu8g1090 1196 Gene3D Kinesin motor domain 184 788 IPR036961 -
Ssu8g1090 1196 MobiDBLite consensus disorder prediction 1 16 - -
Ssu8g1090 1196 MobiDBLite consensus disorder prediction 1051 1102 - -
Ssu8g1090 1196 Gene3D - 556 745 - -
Ssu8g1090 1196 ProSiteProfiles IQ motif profile. 880 909 IPR000048 GO:0005515
Ssu8g1090 1196 Pfam IQ calmodulin-binding motif 882 900 IPR000048 GO:0005515
Ssu8g1090 1196 Pfam IQ calmodulin-binding motif 919 936 IPR000048 GO:0005515
Ssu8g1090 1196 MobiDBLite consensus disorder prediction 17 35 - -
Ssu8g1090 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 905 IPR027417 -
Ssu8g1090 1196 ProSiteProfiles Myosin motor domain profile. 185 855 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu8g1090 1196 PANTHER MYOSIN 124 1194 - -
Ssu8g1090 1196 Pfam Myosin head (motor domain) 187 843 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu8g1090 1196 ProSiteProfiles IQ motif profile. 917 945 IPR000048 GO:0005515
Ssu8g1090 1196 Coils Coil 978 1026 - -
Ssu8g1090 1196 MobiDBLite consensus disorder prediction 99 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1090 Ssu-Chr8 19190790 19202626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1090 1 1190 Myosins gene family AT5G54280 63.137 0.0 1557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1090 K10357 - gmx:100801876 2059.26