Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1086 ATGAACGGGAAGGCCAACGTTTCCAAGGAGCTCAACGCTAAGCACAAGAAgATACTTGAAGGACTTCTTAAATTACCAGAGAATAGGGAATGTGCCGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTTATATGCATGCAGTGTTCAGGAATACATCGAAGTTTGGGGGTACATATATCAAAGGTTCGTTCTGCAACCTGGACACTTGGCTTCCAGAGCAAGTTGCATTCATTCAATCGATGGGAAATGAGAAAGCAAATAGTTACTGGGAAGCAGAATTACCTCCAATTATGA 312 0.4231 MNGKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATWTLGFQSKLHSFNRWEMRKQIVTGKQNYLQL 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1086 103 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 72 IPR044520 GO:0005096
Ssu8g1086 103 CDD ArfGap 19 74 - -
Ssu8g1086 103 SUPERFAMILY ArfGap/RecO-like zinc finger 15 74 IPR037278 -
Ssu8g1086 103 Pfam Putative GTPase activating protein for Arf 17 74 IPR001164 GO:0005096
Ssu8g1086 103 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Ssu8g1086 103 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Ssu8g1086 103 Gene3D Arf GTPase activating protein 2 91 IPR038508 -
Ssu8g1086 103 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 103 IPR001164 GO:0005096
Ssu8g1086 103 SMART arf_gap_3 16 99 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1086 Ssu-Chr8 19109846 19112214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1086 16 72 C2H2 Transcription Factor Family AT4G05330 59.649 2.05e-21 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1086 K12486 - gmx:100789910 148.673