Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1085 atgGCCACCTCTGACCACCCCGACTCACGTCTTTCACGCGTGCACTACTTCTCCAGCGACGACGACCAAGACAACGAGGACGAGGACGACGACGCCGACCTCGACGACCACCGCCACAATGTCAGCGCCGACGAGGCGCCCAAGAAGCCCGACGTCGCCGGCGGCGGTTCCCGCCGCGAGTTCCGGGTGGTGCTGGACCCGCGGGCCAAGTGGGTTCAAGAATGGAACAGGGTGTTCCTCCTCGTCAGTGCTACCGGTTTGTTCGTGGACCCGCTCTTCTTCTACGCGCTCTCCATAAGTGACACGTGTATGTGCCTCTTCGTCGACGGGTGGCTCGTCGTCACCGTCACCGTGCTCCGCTGCATGACCGACGCGTTGCACCTCTGGAACATGTGGCTGCAGTTCAAGATGGCCAAACGTTGTTCTTCGTTTCTCGTAAGAGACACCGACACCACCGCACATGGCTGCTTCGCTCTTCGCTACCTCAAGGCTAAGAGGGGCCTCTTCTTTGACCTCTTTGTCATCCTTCCTATTCCCCAGATTGTGCTATGGGTGGCAATTCCCTCTCTGTTGGAGAAAGGATCAATTACGTTGGTGATGACAGTGTTCCTAATTATGTTCCTCTTTCAATACCTTCCCAAAATTTATCACTCCGTTTGCCTCTTGCGTCGCATGCAAAGCCTCTCTGGCTACATTTTCGGAACCGTTTGGTGGGGTATCGCCCTCAACCTGATCGCGTATTTTGTAGCTTCCCATGCAGCAGGGGCATGTTGGTACTTGCTGGGGTTGCAAAGGGCAGCAAAGTGCCTGCAAGAGCAGTGTGCTAAAACTACTGGTTGTGGCTTGAGAACACTGTGTTGTAAAGAGCCTATATACTATGGAGGCACTAACATTGTGAGAGACAAAACCAGGTTGGCATGGGCGGAGAACAGGGAGGCAAGGTCTACTTGTTTGGATGGTCCTGATAACTACGACTATGGTGCATACAAATGGAGTGTTCAACTTGTAACAAATGATAGCCGATTGGAAAAGATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTTGGGAACTTAGAGAGCACAACGGAGCGGCTAGAAGTCCTTTTCAACATTATTGTGTTGACTAGTGGCCTCCTCCTAGTCACAATGCTGATTGGAAACATCAagGTGTTTTTGCATGCCACAACATCAAAGAAGCAAGCAATGCAATTGAAGATGAGGAACATCGAATGGTGGATGAGCAAAAGGCGATTGCCACAAGGGTTCCGGCAGCGCGTGAGAAACTATGAGCGGCAGCGTTGGGCTGCCATGCGTGGGGTTGATGAATGCCAGATGATAAAAAATCTGCCCGAGGGACTAAGAAGGGACATTAAGTACCATCTTTGTTTGGATCTGGTGAGACAGGTGCCACTATTTCAGCATATGGATGATTTGGTGCTAGAGAACATTTGTGACCGTGTGAAGTCCCTTGTATTCACAAAAGGAGAAACAATAACCAGAGAGGGAGACCCAGTTCAAAGAATGTTATTTGTGGTAAGGGGTCACCTTCAGAGCAGCCAAGTCCTACGAGATGGGGTGAAAAGTTGCTGCATGTTAGGCCCCGGTAACTTCAGTGGTGACGAGTTGCTTTCGTGGTGTCTAAGAAGGCCCTTTATAGAACGCCTTCCACCATCTTCATGCACATTGGCCACGCTTGAAACCACCGAGGCATTTGGGCTCGAAGCGCAGGACGTGAAGTATGTGACGCAGCATTTTAGGTACACGTTTGTGAAGGAAAAGGTTAAGAGAAGCGCGAGGTATTACTCACCCGGGTGGAGAACCTGGGCCGCTGTGGCCATTCAGTTGGCTTGGAGGAGGTATAGGCACCGCTTGACTTTGACATCTTTGTCCTTTATAAGGCCTCGCAGGCCTGCCTCAAGGTGCACTTCCATGGAAGAGGACAGGCTTCGTCTCTACACGGCTTTGTTAACCTCGCCCAAGCCTAATCAGGATGACTTTGACTTCTGA 2019 0.5121 MATSDHPDSRLSRVHYFSSDDDQDNEDEDDDADLDDHRHNVSADEAPKKPDVAGGGSRREFRVVLDPRAKWVQEWNRVFLLVSATGLFVDPLFFYALSISDTCMCLFVDGWLVVTVTVLRCMTDALHLWNMWLQFKMAKRCSSFLVRDTDTTAHGCFALRYLKAKRGLFFDLFVILPIPQIVLWVAIPSLLEKGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQSLSGYIFGTVWWGIALNLIAYFVASHAAGACWYLLGLQRAAKCLQEQCAKTTGCGLRTLCCKEPIYYGGTNIVRDKTRLAWAENREARSTCLDGPDNYDYGAYKWSVQLVTNDSRLEKILFPIFWGLMTLSTFGNLESTTERLEVLFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMSKRRLPQGFRQRVRNYERQRWAAMRGVDECQMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLVFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSCTLATLETTEAFGLEAQDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPASRCTSMEEDRLRLYTALLTSPKPNQDDFDF 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1085 672 CDD CAP_ED 475 581 IPR000595 -
Ssu8g1085 672 MobiDBLite consensus disorder prediction 34 56 - -
Ssu8g1085 672 MobiDBLite consensus disorder prediction 1 20 - -
Ssu8g1085 672 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 669 - -
Ssu8g1085 672 SUPERFAMILY Voltage-gated potassium channels 67 396 - -
Ssu8g1085 672 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 6 669 - -
Ssu8g1085 672 ProSiteProfiles cAMP/cGMP binding motif profile. 475 554 IPR000595 -
Ssu8g1085 672 MobiDBLite consensus disorder prediction 1 56 - -
Ssu8g1085 672 Pfam Ion transport protein 75 392 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu8g1085 672 Pfam Cyclic nucleotide-binding domain 495 583 IPR000595 -
Ssu8g1085 672 Gene3D Jelly Rolls 473 591 IPR014710 -
Ssu8g1085 672 Gene3D Helix hairpin bin 400 466 - -
Ssu8g1085 672 SUPERFAMILY cAMP-binding domain-like 401 589 IPR018490 -
Ssu8g1085 672 SMART cnmp_10 475 604 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1085 Ssu-Chr8 19057576 19066294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1085 64 671 Ion Channels AT5G54250 79.837 0.0 1008
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1085 K05391 - gmx:100800795 1205.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1085 8 19057576 19066294 Ssu8g1085 8 19057576 19066294 ECH