Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1077 ATGACAAAGTCTTCTGGTGAAAAGAACGGACTGAAGAAAGGTCCATGGACTCCAGAGGAAGATCAGAAACTCATCCATTACATTCAGAAACATGGGCATGGGAAATGGCGAACCCTTCCCAAAAATGCAGGACTAAAAAGATGTGGAAAGAGTTGTCGGCTTCGCTGGGCCAACTACTTGAGGCCCGATATAAAGAGAGGGAGATTCTCATTCGAAGAGGAAGAAGCCATCATCCAGTTACATAGTGTTTTGGGAAACAAGTGGTCTACAATTGCTGCTAACTTGCCAGGAAGAACAGATAATGAGATCAAGAACTATTGGAATACCCACATCAAGAAAAAGCTATTGAAGATGGGGATCGATCCAGTGACTCACACACCTCGCCTTGATGTTCTACAACTTGCTTCCTTTCTAAGCTCATCTTTATACAATTCACCCCAATTTAACTACACTGCTCTTTCTGGGATGGGAAGATCTGTGATAAACCCAAGCCAGGTGCTAAGTTTACTCACCACTCTTCTATCATGTCAAAGCAGAAACCATGATGTATTGAATCATAATTACCAGCAAAATAACCAACTTGGGGGTACCCCTCTATTGCAAAATCAACACCAATGTTCCCAACCAATGCAACTTGATTCTATACAAACCTTCCAACCAAACCAACCCCAGGTCTCACTTCAGGAAAACCATATTGCTAAATCCAATCCATTGAATATGGAACCCCAActtatgaaaactaaattaGAGCATCAAATCTCTCCAATTGCTACCTCTTTTAGCCACCAAAACACGCTACCAAATTTGTGGCATTATAATAATGGAGATCACATAATAGATCCACCACAGGCCCAATCATCTTCAGCTATGCAATGTTTCTCTTCTCCCAAGTTCAACTCTATTGTCAACAATCTCTTGGAAAATCAGATTCTGTGTAACAAGCGAGGGGATGCCGAATTTCAATTTAAGCTCACTGTTATCGTCCACACCCTCATCTTCTAG 1002 0.4112 MTKSSGEKNGLKKGPWTPEEDQKLIHYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGRFSFEEEEAIIQLHSVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLLKMGIDPVTHTPRLDVLQLASFLSSSLYNSPQFNYTALSGMGRSVINPSQVLSLLTTLLSCQSRNHDVLNHNYQQNNQLGGTPLLQNQHQCSQPMQLDSIQTFQPNQPQVSLQENHIAKSNPLNMEPQLMKTKLEHQISPIATSFSHQNTLPNLWHYNNGDHIIDPPQAQSSSAMQCFSSPKFNSIVNNLLENQILCNKRGDAEFQFKLTVIVHTLIF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1077 333 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Ssu8g1077 333 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Ssu8g1077 333 Gene3D - 10 66 - -
Ssu8g1077 333 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 310 - -
Ssu8g1077 333 CDD SANT 68 111 IPR001005 -
Ssu8g1077 333 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Ssu8g1077 333 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Ssu8g1077 333 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Ssu8g1077 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Ssu8g1077 333 CDD SANT 15 60 IPR001005 -
Ssu8g1077 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Ssu8g1077 333 Gene3D - 68 115 - -
Ssu8g1077 333 SMART sant 65 113 IPR001005 -
Ssu8g1077 333 SMART sant 12 62 IPR001005 -
Ssu8g1077 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1077 Ssu-Chr8 18950966 18952925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1077 7 223 MYB Transcription Factor Family AT4G21440 60.352 3.95e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu8g1077 Myb_DNA-binding 4.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1077 K09422 - gmx:100820398 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1077 8 18950966 18952925 Ssu8g1077 8 18950966 18952925 ECH