Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1076 ATGGATTCTGACACTGAGTTCCCCATGCCTAGTTACAGGGAACGTGAAGCTATAACTCGTTACCTCGAAATCGAGCACGAATTCATCGCCGCCACGGACTTCTACACAACGGCCAGCAACCTTCAGTACCGGAGGCACGCCGTTTCGACTATCGCCAGGCTCTGGCATGCTGAAGTTCTTGATGTGTATATTCCTTATCTTGCAATGAACTACTTTGATCGCTTCGCTTCAACGAATCCACTTACAaaagacaaaaaagtGAATTTCAAGCCTGATAGGATAATGAGAATGGAGTATCGCATTCTCAGTGGACTTGACTGGCGAATGCGATCTATAACTCCCTTTTACTTCCTGACCACTATTATCCTATCTTCAAAAGAATCGGTGGTTTCAAACGCCGTTGCATCAATGAGATCATAG 420 0.4429 MDSDTEFPMPSYREREAITRYLEIEHEFIAATDFYTTASNLQYRRHAVSTIARLWHAEVLDVYIPYLAMNYFDRFASTNPLTKDKKVNFKPDRIMRMEYRILSGLDWRMRSITPFYFLTTIILSSKESVVSNAVASMRS 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1076 139 PANTHER CYCLINS 1 83 IPR039361 -
Ssu8g1076 139 SUPERFAMILY Cyclin-like 12 109 IPR036915 -
Ssu8g1076 139 Gene3D - 88 110 - -
Ssu8g1076 139 PANTHER CYCLINS 88 118 IPR039361 -
Ssu8g1076 139 Gene3D - 111 123 - -
Ssu8g1076 139 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 88 118 - -
Ssu8g1076 139 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1076 Ssu-Chr8 18929912 18931519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1076 16 119 Core Cell Cycle Gene Families AT1G70210 26.761 1.58e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1076 K18812 - pvu:PHAVU_005G087500g 150.214